Description Usage Arguments Value See Also Examples
This function highlights the genes involved in the present GPS for a pathway of interest in its diagram. Please note that this functionality is only implemented for results of Reactome or KEGG based analyses.
1 | getURL(yy, i)
|
yy |
A sigora analysis result object (created by |
i |
The rank position of the pathway of interest in summary_results. |
The URL of the pathway diagram, where the relevant genes from your original query list are highlighted.
1 2 3 4 5 6 7 8 9 | a1<-genesFromRandomPathways(seed=12345,kegH,3,50)
## originally selected pathways:\cr
a1[["selectedPathways"]]
## what are the genes
a1[["genes"]]
## sigora's results with this input:\cr
sigoraRes <- sigora(GPSrepo =kegH, queryList = a1[["genes"]],level = 2)
## Diagram for the most significant result, where the genes from our list are highlighted in red:
getURL(sigoraRes,1)
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