This function highlights the genes involved in the present GPS for a pathway of interest in its diagram. Please note that this functionality is only implemented for results of Reactome or KEGG based analyses.
A sigora analysis result object (created by
The rank position of the pathway of interest in summary_results.
The URL of the pathway diagram, where the relevant genes from your original query list are highlighted.
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a1<-genesFromRandomPathways(seed=12345,kegH,3,50) ## originally selected pathways:\cr a1[["selectedPathways"]] ## what are the genes a1[["genes"]] ## sigora's results with this input:\cr sigoraRes <- sigora(GPSrepo =kegH, queryList = a1[["genes"]],level = 2) ## Diagram for the most significant result, where the genes from our list are highlighted in red: getURL(sigoraRes,1)
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