mate: Mate

In simer: Data Simulation for Life Science and Breeding

Mate

Description

Mating according to the indice of sires and dams.

Usage

mate(pop.geno, index.sir, index.dam, ncpus = 0)

Arguments

pop.geno	the genotype data.
index.sir	the indice of sires.
index.dam	the indice of dams.
ncpus	the number of threads used, if NULL, (logical core number - 1) is automatically used.

Details

Build date: Nov 14, 2018 Last update: Jan 28, 2025

Value

a genotype matrix after mating

Author(s)

Dong Yin

Examples

# Generate the genotype data
SP <- param.geno(pop.marker = 1e4, pop.ind = 1e2)
SP <- genotype(SP)
pop.geno <- SP$geno$pop.geno$gen1

# The mating design
index.sir <- rep(1:50, each = 2)
index.dam <- rep(51:100, each = 2)

# Mate according to mating design
geno.curr <- mate(pop.geno = pop.geno, index.sir = index.sir,
                  index.dam = index.dam)
geno.curr[1:5, 1:5]

simer documentation built on April 3, 2025, 9:24 p.m.