param.geno: Genotype parameters generator

In simer: Data Simulation for Life Science and Breeding

Genotype parameters generator

Description

Generate parameters for genotype data simulation.

Usage

param.geno(SP = NULL, ...)

Arguments

SP	a list of all simulation parameters.
...	one or more parameter(s) for genotype simulation.

Details

Build date: Feb 21, 2022 Last update: Jan 27, 2025

Value

the function returns a list containing

$geno$pop.geno

the genotype data.

$geno$inrows

"1":one-row genotype represents an individual; "2": two-row genotype represents an individual.

$geno$pop.marker

the number of markers.

$geno$pop.ind

the number of individuals in the base population.

$geno$prob

the genotype code probability.

$geno$rate.mut

the mutation rate of the genotype data.

$geno$cld

whether to generate a complete LD genotype data when "inrows == 2".

Author(s)

Dong Yin

Examples

SP <- param.geno(pop.marker = 1e4, pop.ind = 1e2)
str(SP)

simer documentation built on April 3, 2025, 9:24 p.m.