param.global: Global parameters generator

In simer: Data Simulation for Life Science and Breeding

Global parameters generator

Description

Generate parameters for global options.

Usage

param.global(SP = NULL, ...)

Arguments

SP	a list of all simulation parameters.
...	one or more parameter(s) for global options.

Details

Build date: Apr 16, 2022 Last update: Jul 4, 2022

Value

the function returns a list containing

$replication

the replication times of simulation.

$seed.sim

simulation random seed.

$out

the prefix of output files.

$outpath

the path of output files, Simer writes files only if outpath is not "NULL".

$out.format

"numeric" or "plink", the data format of output files.

$pop.gen

the generations of simulated population.

$out.geno.gen

the output generations of genotype data.

$out.pheno.gen

the output generations of phenotype data.

$useAllGeno

whether to use all genotype data to simulate phenotype.

$missing.geno

the ratio of missing values in genotype data.

$missing.phe

the ratio of missing values in phenotype data.

$ncpus

the number of threads used, if NULL, (logical core number - 1) is automatically used.

$verbose

whether to print detail.

Author(s)

Dong Yin

Examples

SP <- param.global(out = "simer")
str(SP)

simer documentation built on April 3, 2025, 9:24 p.m.