reproduces: Reproduction

In simer: Data Simulation for Life Science and Breeding

Reproduction

Description

Population reproduction by different mate design.

Usage

reproduces(SP, ncpus = 0, verbose = TRUE)

Arguments

SP	a list of all simulation parameters.
ncpus	the number of threads used, if NULL, (logical core number - 1) is automatically used.
verbose	whether to print detail.

Details

Build date: Nov 14, 2018 Last update: Feb 18, 2025

Value

the function returns a list containing

$reprod$pop.gen

the generations of simulated population.

$reprod$reprod.way

reproduction method, it consists of "clone", "dh", "selfpol", "randmate", "randexself", "assort", "disassort", "2waycro", "3waycro", "4waycro", "backcro", and "userped".

$reprod$sex.rate

the male rate in the population.

$reprod$prog

the progeny number of an individual.

$reprod$userped

the pedigree designed by user.

$geno

a list of genotype simulation parameters.

$pheno

a list of phenotype simulation parameters.

Author(s)

Dong Yin

Examples

# Generate annotation simulation parameters
SP <- param.annot(qtn.num = list(tr1 = 10))
# Generate genotype simulation parameters
SP <- param.geno(SP = SP, pop.marker = 1e4, pop.ind = 1e2)
# Generate phenotype simulation parameters
SP <- param.pheno(SP = SP, pop.ind = 100)
# Generate selection parameters
SP <- param.sel(SP = SP, sel.single = "ind")
# Generate reproduction parameters
SP <- param.reprod(SP = SP, reprod.way = "randmate")

# Run annotation simulation
SP <- annotation(SP)
# Run genotype simulation
SP <- genotype(SP)
# Run phenotype simulation
SP <- phenotype(SP)
# Run selection
SP <- selects(SP)
# Run reproduction
SP <- reproduces(SP)

simer documentation built on April 3, 2025, 9:24 p.m.