sir_example: Example dataset for a multi-group SIR model
In simode: Statistical Inference for Systems of Ordinary Differential Equations using Separable Integral-Matching
Description
A model for the spread of a seasonal influenza epidemics in two groups
over five seasons.
Usage
1
Format
A list containing the following variables:
- equations
The ODE equations describing the system, including
ten equations for the susceptible dynamics (2 groups * 5 seasons) and
ten equations for the infected dynamics.
- beta
The 2x2 transmission matrix parameters (in time unit of weeks).
- gamma
The recovery rate parameter (in time unit of weeks).
- kappa
The relative infectiousness of seasons 2-5 compared to season 1.
- S0
The initial conditions for the susceptible variables.
- I0
The initial conditions for the infected variables.
- time
Times in which the observations were made (in weeks).
- obs
A list of observations of the infected variables,
generated using Gaussian measurement error with sigma=1e-3.
simode documentation built on July 1, 2020, 10:30 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
A model for the spread of a seasonal influenza epidemics in two groups over five seasons.
Usage
1 |
Format
A list containing the following variables:
- equations
The ODE equations describing the system, including ten equations for the susceptible dynamics (2 groups * 5 seasons) and ten equations for the infected dynamics.
- beta
The 2x2 transmission matrix parameters (in time unit of weeks).
- gamma
The recovery rate parameter (in time unit of weeks).
- kappa
The relative infectiousness of seasons 2-5 compared to season 1.
- S0
The initial conditions for the susceptible variables.
- I0
The initial conditions for the infected variables.
- time
Times in which the observations were made (in weeks).
- obs
A list of observations of the infected variables, generated using Gaussian measurement error with sigma=1e-3.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.