Description Usage Arguments Details Value
View source: R/simode_profile.R
Calculate likelihood profiles for the model parameters
1 2 3 4 5 6 7 8 9 10 11 12 13 |
fitted |
|
which |
Which parameters to estimate the profile for. |
optim_type |
Whether to calculate the profiles based on maximum-likelihood optimization only ('nls') or based on integral-matching followed by maximum-likelihood optimization ('both'). |
step_size |
Step size for profiling (one value for all parameters or
a value for each parameter in |
max_steps |
Maximum number of steps to take in each direction. |
alpha |
Maximum (two-sided) likelihood ratio test confidence level to find. |
skip_err |
Whether on not to stop the calculation if encountering a problem with one point in the profile. |
trace |
Report level (0-4), with higher values producing more tracing information. |
save_to_log |
Whether to redirect output to log file. The log file will be saved to tempdir(). |
... |
Additional argument(s) for methods. |
If the call to simode
, which returned the fitted object given to
this method, included a user-defined likelihood function (with the calc_nll
argument),
then the likelihood profiles will be calculated using this function. Otherwise,
the profiles will be calculated using a likelihood based on a Gaussian distribuion
with fixed sigma, where sigma will be estimated in the background together with
the rest of the model parameters.
The likelihood profiles.
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