Man pages for simplePHENOTYPES
Simulation of Pleiotropic, Linked and Epistatic Phenotypes
| Base_line_multi_traits | Calculate genetic value based on QTN objects. |
| Base_line_single_trait | Calculate genetic value based on QTN objects. |
| constraint | Select SNPs to be assigned as QTNs: To be included LD, FST |
| create_phenotypes | Simulation of single/multiple traits under different models... |
| file_loader | Function used by create_phenotypes to load marker dataset. |
| genetic_effect | Calculate genetic value based on QTN objects. |
| Genotypes | Generate a numeric (dosage) HapMap file |
| make_pd | obtain a positive definite matrix |
| numericalization | Converts character SNP genotype to numerical (-1, 0, 1) were... |
| Phenotypes | Generate environmental effects based on a given heritability |
| qtn_from_user | Select SNPs to be assigned as QTNs |
| QTN_linkage | Select SNPs to be assigned as QTNs |
| QTN_partially_pleiotropic | Select SNPs to be assigned as QTNs |
| QTN_pleiotropic | Select SNPs to be assigned as QTNs. |
| SNP55K_maize282_maf04 | Genotypic data for 282 inbred association panel using the 55K... |
