qtn_partially_pleiotropic: Select SNPs to be assigned as QTNs

In simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes

Description

Select SNPs to be assigned as QTNs

Usage

qtn_partially_pleiotropic(
  genotypes = NULL,
  seed = NULL,
  pleio_a = NULL,
  pleio_d = NULL,
  pleio_e = NULL,
  trait_spec_a_QTN_num = NULL,
  trait_spec_d_QTN_num = NULL,
  trait_spec_e_QTN_num = NULL,
  epi_type = NULL,
  epi_interaction = 2,
  ntraits = NULL,
  constraints = list(maf_above = NULL, maf_below = NULL, hets = NULL),
  rep = NULL,
  rep_by = NULL,
  export_gt = NULL,
  same_add_dom_QTN = NULL,
  add = NULL,
  dom = NULL,
  epi = NULL,
  verbose = verbose
)

Arguments

genotypes	= NULL,
seed	= NULL,
pleio_a	= NULL,
pleio_d	= NULL,
pleio_e	= NULL,
trait_spec_a_QTN_num	= NULL,
trait_spec_d_QTN_num	= NULL,
trait_spec_e_QTN_num	= NULL,
epi_type	= NULL,
epi_interaction	= 2,
ntraits	= NULL
constraints	= list(maf_above = NULL, maf_below = NULL)
rep	= 1,
rep_by	= 'QTN',
export_gt	= FALSE
same_add_dom_QTN	= NULL,
add	null
dom	= NULL,
epi	= NULL
verbose	= verbose

Value

Genotype of selected SNPs

Author(s)

Samuel Fernandes and Alexander Lipka Last update: Apr 20, 2020

—————————– QTN_partially_pleiotropic ———————-

simplePHENOTYPES documentation built on Jan. 20, 2021, 5:09 p.m.