constraint: Select SNPs to be assigned as QTNs: To be included LD, FST

In simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes

Select SNPs to be assigned as QTNs: To be included LD, FST

Description

Select SNPs to be assigned as QTNs: To be included LD, FST

Usage

constraint(
  genotypes = NULL,
  maf_above = NULL,
  maf_below = NULL,
  hets = NULL,
  verbose = verbose
)

Arguments

genotypes	a numericalized genotype object (geno_obj).
maf_above	Threshold for the minimum value of minor allele frequency.
maf_below	Threshold for the maximum value of minor allele frequency.
hets	Option of including (\'include\') and removing (\'remove\') only heterozygotes.
verbose	= verbose

Value

Return a filtered dataset to be used when selecting QTNs. Last update: Apr 20, 2020

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simplePHENOTYPES documentation built on Oct. 5, 2026, 1:06 a.m.