genotypes: Generate a numeric (dosage) HapMap file

In simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes

Description

Generate a numeric (dosage) HapMap file

Usage

genotypes(
  geno_obj = NULL,
  geno_file = NULL,
  geno_path = NULL,
  nrows = Inf,
  na_string = "NA",
  prefix = NULL,
  maf_cutoff = NULL,
  SNP_effect = "Add",
  SNP_impute = "Middle",
  verbose = TRUE,
  chr_prefix = "chr"
)

Arguments

geno_obj	= NULL,
geno_file	= NULL,
geno_path	= NULL,
nrows	= Inf,
na_string	= "NA",
prefix	= NULL,
maf_cutoff	= NULL,
SNP_effect	= 'Add',
SNP_impute	= 'Middle',
verbose	= verbose
chr_prefix	= "chrm"

Value

A numeric HapMap

Author(s)

Samuel Fernandes and Alexander Lipka Last update: Apr 20, 2020

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simplePHENOTYPES documentation built on Jan. 20, 2021, 5:09 p.m.