Files in smidm

Statistical Modelling for Infectious Disease Management

README.md R/calculate_posterior_no_infections.R R/get_infectiousness_density.R R/calculate_likelihood_negative_tests.R R/get_serial_interval_density.R R/get_misc_infection_density.R R/predict_future_infections.R R/utility_functions.R R/get_test_sensitivities.R R/calculate_prior_infections.R R/get_infection_density.R R/get_incubation_day_distribution.R R/get_expected_total_infections.R R/validation_functions.R inst/doc/risk_assessment_group_quarantine.Rmd inst/doc/future_infections.R inst/doc/future_infections.Rmd inst/doc/infection_period.Rmd inst/doc/contacts.Rmd inst/doc/contagious_period.R inst/doc/risk_assessment_group_quarantine.R inst/doc/contagious_period.Rmd inst/doc/contacts.R inst/doc/infection_period.R tests/testthat.R tests/testthat/test_get_misc_infection_density.R tests/testthat/test_predict_future_infections.R tests/testthat/test_get_serial_interval_density.R tests/testthat/test_calculate_posterior_no_infections.R tests/testthat/test_calculate_likelihood_negative_tests.R tests/testthat/test_get_infectiousness_density.R tests/testthat/test_get_expected_total_infections.R tests/testthat/test_validation_functions.R tests/testthat/test_calculate_prior_infections.R tests/testthat/test_get_infection_density.R tests/testthat/test_get_incubation_day_distribution.R vignettes/risk_assessment_group_quarantine.Rmd vignettes/future_infections.Rmd vignettes/infection_period.Rmd vignettes/contacts.Rmd vignettes/contagious_period.Rmd man/generate_data_extended.Rd man/get_misc_infection_density.Rd man/get_incubation_day_distribution.Rd man/get_serial_interval_density.Rd man/calculate_prior_infections.Rd man/get_expected_total_infections.Rd man/predict_future_infections.Rd man/get_infectiousness_density.Rd man/calculate_posterior_no_infections.Rd man/calculate_likelihood_negative_tests_k.Rd man/p_onePrimaryMore.Rd man/get_infection_density.Rd man/calculate_likelihood_negative_tests.Rd man/get_test_sensitivities.Rd