Nothing
dfnsuniv <- function(time, time2=NULL, status, nl.predictor, other.predictors, method, maxdf=NULL, data) {
options(warn=-1);
ctype <- "FALSE";
if ( missing(data) ) {stop("The argument data is missing");}
if ( missing(time) ) {stop("The argument time is missing");}
if ( missing(status) ) {stop("The argument status is missing");}
if ( missing(nl.predictor) ) {stop("The argument 'nl.predictor' is missing");}
if ( !missing(time2) ) {ctype <- "TRUE";}
if ( missing(method) ) {method <- "AIC";}
if ( missing(maxdf) ) {maxdf <- 15;}
if ( method != "AIC" & method != "AICc" & method != "BIC") {stop("The argument 'method' is not valid");}
p0 <- match(names(data), time, nomatch=0);
p1 <- which(p0==1);
ntime <- data[,p1];
p2 <- match(names(data), status, nomatch=0);
p3 <- which(p2==1);
nstatus <- data[,p3];
if (ctype == TRUE) {
p2 <- match(names(data), time2, nomatch=0);
p3 <- which(p2 == 1);
ntime2 <- data[,p3];
}
myaic <- vector(length=maxdf);
if ( !missing(other.predictors) ) {opred <- paste(other.predictors, collapse="+");}
if (ctype == "TRUE") {
p4 <- match(names(data), time2, nomatch=0);
p5 <- which(p4 == 1);
ntime2 <- data[,p5];
}
for ( k in 1:as.integer(maxdf) ) {
npred1 <- paste("ns(", nl.predictor, ", df=", k, ")");
if ( !missing(other.predictors) ) {pred <- paste(npred1, opred, sep="+");}
else {pred <- npred1;}
#pred <- paste("ns(", predictor, ", df=", k, ")");
if (ctype == "TRUE") {
covar <- as.formula( paste(" Surv(ntime,ntime2,nstatus)~ ", pred) );
try(fit1 <- coxph(covar, data=data, x=TRUE), TRUE);
} else {
covar <- as.formula( paste(" Surv(ntime,nstatus)~ ", pred) );
try(fit1 <- coxph(covar, data=data, x=TRUE), TRUE);
}
if (method == "AIC") {try(myaic[k] <- -2*fit1$loglik[2]+2*k, TRUE);}
else if (method == "AICc") {try(myaic[k] <- -2*fit1$loglik[2]+2*fit1$nevent*(k+1)/(fit1$nevent-k-2), TRUE);}
else if (method == "BIC") {try(myaic[k] <- -2*fit1$loglik[2]+2*log(fit1$nevent)*k, TRUE);}
}
df <- which.min(myaic);
options(warn=0);
return(df);
} # dfnsuniv
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.