gene.curated.GRCh38: Human gene information from the GENCODE GRCh38 version

In snpsettest: A Set-Based Association Test using GWAS Summary Statistics

Human gene information from the GENCODE GRCh38 version

Description

Human gene information was extracted from the GENCODE release 37. This data only contains genes with the following gene biotypes: protein-coding, Immunoglobulin (Ig) variable chain and T-cell receptor (TcR) genes.

Usage

gene.curated.GRCh38

Format

Data frame with columns

gene.id

SNP ID.

chr

chromosome.

start

genomic start location (1-based).

end

genomic end location.

strand

genomic strand.

gene.name

gene symbols mapped to the GENCODE genes.

gene.type

gene biotypes in the GENCODE genes.

Source

https://www.gencodegenes.org/human/release_37.html

Examples

head(gene.curated.GRCh38)

snpsettest documentation built on Sept. 10, 2023, 1:08 a.m.