Solving Mixed Model Equations in R

adiag1 | Binds arrays corner-to-corner |

A.mat | Additive relationship matrix |

anova | anova form a GLMM fitted with mmer |

AR1mat | Autocorrelation matrix of order 1. |

ARMAmat | Autocorrelation Moving average. |

at | at covariance structure |

atcg1234 | Letter to number converter |

bathy.colors | Generate a sequence of colors for plotting bathymetric data. |

build.HMM | Build a hybrid marker matrix using parental genotypes |

coef | coef form a GLMM fitted with mmer |

cs | customized covariance structure |

CSmat | Compound symmetry matrix |

D.mat | Dominance relationship matrix |

ds | diagonal covariance structure |

DT_augment | DT_augment design example. |

DT_btdata | Blue Tit Data for a Quantitative Genetic Experiment |

DT_cornhybrids | Corn crosses and markers |

DT_cpdata | Genotypic and Phenotypic data for a CP population |

DT_example | Broad sense heritability calculation. |

DT_expdesigns | Data for different experimental designs |

DT_fulldiallel | Full diallel data for corn hybrids |

DT_gryphon | Gryphon data from the Journal of Animal Ecology |

DT_h2 | Broad sense heritability calculation. |

DT_halfdiallel | half diallel data for corn hybrids |

DT_legendre | Simulated data for random regression |

DT_polyploid | Genotypic and Phenotypic data for a potato polyploid... |

DT_rice | Rice lines dataset |

DT_technow | Genotypic and Phenotypic data from single cross hybrids... |

DT_wheat | wheat lines dataset |

DT_yatesoats | Yield of oats in a split-block experiment |

EM | Expectation Maximization Algorithm |

E.mat | Epistatic relationship matrix |

EMMA | Multivariate Efficient Mixed Model Association Algorithm |

fcm | fixed effect constraint indication matrix |

fill.design | Filling the design of an experiment |

fitted | fitted form a GLMM fitted with mmer |

fixm | fixed indication matrix |

GWAS | Genome wide association study |

GWAS2 | Genome wide association study |

h2.fun | Obtain heritabilities with three different methods |

impute | Imputing a numeric or character vector |

jet.colors | Generate a sequence of colors alog the jet colormap. |

leg | Legendre polynomial matrix |

list2usmat | list or vector to unstructured matrix |

manhattan | Creating a manhattan plot |

map.plot | Creating a genetic map plot |

mmer | *m*ixed *m*odel *e*quations in *R* |

mmer2 | *m*ixed *m*odel *e*quations in *R* |

overlay | Overlay Matrix |

pedtoK | Pedigree to matrix |

pin | pin functionality |

plot | plot form a LMM plot with mmer |

predict | Predict form a LMM fitted with mmer |

randef | extracting random effects |

residuals | Residuals form a GLMM fitted with mmer |

sommer-package | *So*lving *M*ixed *M*odel *E*quations in *R* |

spatPlots | Spatial plots |

spl2D | Two-dimensional penalised tensor-product of marginal B-Spline... |

summary | summary form a GLMM fitted with mmer |

transp | Creating color with transparency |

uncm | unconstrained indication matrix |

unsm | unstructured indication matrix |

us | unstructured covariance structure |

vs | variance structure |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.