API for sommer
Solving Mixed Model Equations in R
| Global functions | |
|---|---|
| .align_spatial_weights | Source code |
| .amat_marker_transform | Source code |
| .ar_correlation_from_pacf | Source code |
| .arp_m | Source code |
| .compile_covfactor | Source code |
| .conditional_fa_ai | Source code |
| .conditional_fa_ai_bounds | Source code |
| .conditional_fa_ai_step | Source code |
| .conditional_fa_component | Source code |
| .conditional_fa_coordinates | Source code |
| .conditional_fa_decode | Source code |
| .conditional_fa_derivative | Source code |
| .conditional_fa_descriptor | Source code |
| .conditional_fa_posterior | Source code |
| .conditional_fa_prepare | Source code |
| .conditional_fa_prior_solve | Source code |
| .conditional_fa_system | Source code |
| .conditional_fa_update | Source code |
| .cov_dummy | Source code |
| .covfactor_native_report | Source code |
| .covfactor_representation | Source code |
| .covparams_mmes | Source code |
| .covparams_mmes_se | Source code |
| .covparams_select_terms | Source code |
| .covparams_term_names | Source code |
| .covparams_term_report | Source code |
| .dt_strip_labels | Source code |
| .factor_digit | Source code |
| .factor_score_augment | Source code |
| .factor_score_decomposition | Source code |
| .factor_score_restore | Source code |
| .fixed_rank | Source code |
| .geometric_distance | Source code |
| .giv_to_precision | Source code |
| .is_giv | Source code |
| .kenward_roger | Source code |
| .make_covfactor | Source code |
| .matrix_to_working | Source code |
| .metric_shape | Source code |
| .mme_benchmark_difference | Source code |
| .mme_benchmark_row | Source code |
| .mme_blend_weight | Source code |
| .mme_choice | Source code |
| .mme_compression_control | Source code |
| .mme_control_paths | Source code |
| .mme_covariance_information | Source code |
| .mme_experimental_mode | Source code |
| .mme_flag | Source code |
| .mme_module | Source code |
| .mme_path_value | Source code |
| .mme_pcg_control | Source code |
| .mme_pcg_mapping | Source code |
| .mme_pcg_public | Source code |
| .mme_positive | Source code |
| .mme_profile_columns | Source code |
| .mme_requested | Source code |
| .mme_sparse_factor_kernels_auto | Source code |
| .mmes_available_cpus | Source code |
| .mmes_blas_controller | Source code |
| .mmes_blas_scope | Source code |
| .mmes_call_name | Source code |
| .mmes_capabilities | Source code |
| .mmes_check_compatibility | Source code |
| .mmes_check_estimable_fixed | Source code |
| .mmes_check_family_controls | Source code |
| .mmes_check_fixed_design | Source code |
| .mmes_compatibility_rules | Source code |
| .mmes_compile_control | Source code |
| .mmes_conditional_fa | Source code |
| .mmes_control_args | Source code |
| .mmes_control_build | Source code |
| .mmes_df_machinery | Source code |
| .mmes_engine_contrast | Source code |
| .mmes_engine_control | Source code |
| .mmes_eval_model_expr | Source code |
| .mmes_execution_plan | Source code |
| .mmes_expr_label | Source code |
| .mmes_fa_term | Source code |
| .mmes_factor_score_profile | Source code |
| .mmes_fit | Source code |
| .mmes_fixed_information_at | Source code |
| .mmes_formula_env | Source code |
| .mmes_gpu_hardware | Source code |
| .mmes_gpu_message | Source code |
| .mmes_gpu_require | Source code |
| .mmes_gpu_status | Source code |
| .mmes_has_call | Source code |
| .mmes_hat_diagonal | Source code |
| .mmes_henderson_vcov | Source code |
| .mmes_known_covpar | Source code |
| .mmes_method_keep | Source code |
| .mmes_observation_ok | Source code |
| .mmes_observed_predictions | Source code |
| .mmes_pql | Source code |
| .mmes_prediction_memory | Source code |
| .mmes_prepare_weights | Source code |
| .mmes_prior_vcov | Source code |
| .mmes_random_precision | Source code |
| .mmes_rebuild_inputs | Source code |
| .mmes_reduce_fixed | Source code |
| .mmes_reml_omit | Source code |
| .mmes_reml_public_factor | Source code |
| .mmes_reml_report_status | Source code |
| .mmes_reml_restore | Source code |
| .mmes_require_coefficient_matrix | Source code |
| .mmes_require_covariance_information | Source code |
| .mmes_require_full_rank_inference | Source code |
| .mmes_restore_fixed | Source code |
| .mmes_solve | Source code |
| .mmes_split_plus | Source code |
| .mmes_start_lsq | Source code |
| .mmes_thread_finish | Source code |
| .mmes_thread_report | Source code |
| .mmes_varu_check | Source code |
| .mmes_vcov_solver | Source code |
| .mmes_warm_start | Source code |
| .mv_start_shapes | Source code |
| .natural_to_working | Source code |
| .natural_vector_to_working | Source code |
| .onAttach | Source code |
| .onLoad | Source code |
| .pql_apply | Source code |
| .pql_fix_levels | Source code |
| .pql_fixed_dispersion | Source code |
| .predict_comparisons | Source code |
| .predict_df | Source code |
| .relationship_impute | Source code |
| .satterthwaite_ddf | Source code |
| .set_covstruct_par | Source code |
| .sparse_model_matrix_by_rows | Source code |
| .sparse_rank | Source code |
| .spatial_cov_dummy | Source code |
| .spatial_row_tensor | Source code |
| .usm_par_from_K | Source code |
| .validate_covfactor | Source code |
| .vc_constraint_map | Source code |
| .vc_kind | Source code |
| .vc_param_table | Source code |
| .vc_to_natural | Source code |
| .vc_to_working | Source code |
| .wald_contains | Source code |
| .wald_contrast | Source code |
| .wald_fixed_vcov | Source code |
| .wald_term_columns | Source code |
| .wald_term_vars | Source code |
| A.mat | Man page Source code |
| APY | Man page Source code |
| D.mat | Man page Source code |
| E.mat | Man page Source code |
| GWAS | Man page Source code |
| H | Source code |
| H.mat | Man page Source code |
| MNR | Man page Source code |
| ai_mme_sp | Source code |
| ai_mme_sp2 | Source code |
| ai_reml_direct_sp2 | Source code |
| amat | Source code |
| analyze_mme_crossovers | Man page Source code |
| anova.mmer | Man page |
| anova.mmes | Man page Source code |
| antem | Man page Source code |
| ar1m | Man page Source code |
| ar2m | Man page Source code |
| ar3m | Man page Source code |
| atm | Man page Source code |
| atr | Man page Source code |
| binm | Man page Source code |
| car | Man page Source code |
| coef.mmer | Man page |
| coef.mmes | Man page |
| convertSparse | Source code |
| corImputation | Man page Source code |
| corgm | Man page Source code |
| covm | Man page Source code Source code |
| covmatrix_mmes | Man page Source code |
| covparams_mmes | Man page |
| covparams_mmes_se | Man page |
| csm | Man page Source code |
| csr | Man page Source code |
| currentDateTime | Source code |
| dfToMatrix | Man page Source code |
| dmat | Source code |
| dsm | Man page Source code |
| dsr | Man page Source code |
| dsumm | Man page Source code |
| emat | Source code |
| emat_genotypes | Source code |
| emm_basis.mmes | Source code |
| evaluate_covstruct_cpp | Source code |
| fam | Man page Source code |
| familym | Man page Source code |
| fitted.mmer | Man page |
| fitted.mmes | Man page |
| fixed_design_basis_cpp | Source code |
| fixm | Man page Source code |
| generate_mme_workload | Man page Source code |
| gwasForLoop | Source code |
| hmat | Source code |
| is.square.matrix | Source code |
| isDiagonal_mat | Source code |
| isDiagonal_spmat | Source code |
| isIdentity_mat | Source code |
| isIdentity_spmat | Source code |
| ism | Man page Source code |
| loadings_mmes | Man page |
| ma1m | Man page Source code |
| ma2m | Man page Source code |
| makeFull | Source code |
| mam | Man page Source code |
| mat_to_vecCpp | Source code |
| mat_to_vecCpp2 | Source code |
| maternm | Man page Source code |
| matrix.trace | Source code |
| meffects_mmes | Man page Source code |
| metricm | Man page Source code |
| mme_conditional_moments_cpp | Source code |
| mme_conditional_solve_cpp | Source code |
| mme_gpu_runtime_status | Source code |
| mme_pcg_solve | Source code |
| mme_workload_grid | Man page Source code |
| mmer | Man page Source code |
| mmes | Man page Source code |
| mmes_control | Man page Source code |
| mmes_vcov_factor_cpp | Source code |
| mmes_vcov_solve_cpp | Source code |
| myformula | Source code |
| nearPDcpp | Source code |
| newton_di_sp | Source code |
| ownm | Man page Source code |
| plot.mmer | Man page |
| plot.mmes | Man page Source code |
| pmonitor | Man page Source code |
| postPEV | Man page Source code |
| postVarU | Man page Source code |
| post_mme_Cinverse_cpp | Source code |
| predict.mmer | Man page |
| predict.mmes | Man page |
| predict_mmes_vcov_cpp | Source code |
| print.mmer | Man page |
| print.mmes | Man page |
| print.mmesSolve | Source code |
| print.sommer_mme_benchmark | Man page Source code |
| print.sommer_mme_crossover | Man page Source code |
| print.sommer_mme_profile | Man page Source code |
| print.sommer_mmes_control | Man page Source code |
| print.summary.mmer | Man page |
| print.summary.mmes | Man page |
| print.wald.mmes | Man page Source code |
| profile_mme_workload | Man page Source code |
| r2 | Man page Source code |
| randef | Man page |
| recover_data.mmes | Source code |
| replace.values | Source code |
| reshape_mmer | Source code |
| residuals.mmer | Man page |
| residuals.mmes | Man page |
| rotate_back_mmes | Man page Source code |
| rrm | Man page Source code |
| run_mme_benchmark | Man page Source code |
| sar | Man page Source code |
| scaleCpp | Source code |
| scorecalc | Source code |
| scores_mmes | Man page |
| seqCpp | Source code |
| simGECorMat | Source code |
| sommer | Man page |
| spl2Da | Man page |
| spl2Db | Man page |
| spl2Dc | Man page Source code |
| spl2Dmats | Man page Source code |
| stackTraits | Man page Source code |
| strm | Man page Source code |
| subdata | Source code |
| summary.mmer | Man page |
| summary.mmes | Man page |
| to_precision_sparse | Source code |
| to_sparse | Source code |
| toeplitzm | Man page Source code |
| tpsmmbwrapper | Man page |
| unsm | Man page Source code |
| unsm2 | Man page |
| usm | Man page Source code |
| usr | Man page Source code |
| varCols | Source code |
| vcParams | Man page |
| vcc | Man page |
| vcsExtract | Source code |
| vec_to_cubeCpp | Source code |
| vec_to_matCpp | Source code |
| vpredict | Man page Source code |
| vpredict.mmes | Man page Source code |
| vs | Man page Source code |
| vsm | Man page Source code |
| vsr | Man page Source code |
| wald_mmes | Man page Source code |
