| treeprune | R Documentation |
Prune a tree by removing all the branches above a given level.
treeprune(X, root = 1, level = 0)
X |
Object of class |
root |
Index of the root vertex amongst the vertices of |
level |
Integer specifying the level above which the tree should be pruned. |
The object X must be either a linear network, or a derived
object such as a point pattern on a linear network. The linear network
must be an acyclic graph (i.e. must not contain any loops) so that it
can be interpreted as a tree.
This function removes all vertices
for which treebranchlabels gives a
string more than level characters long.
Object of the same kind as X.
treebranchlabels for calculating the branch labels.
deletebranch for removing entire branches.
extractbranch for extracting entire branches.
linnet for creating networks.
# make a simple tree
m <- simplenet$m
m[8,10] <- m[10,8] <- FALSE
L <- linnet(vertices(simplenet), m)
plot(L, main="")
# compute branch labels
tb <- treebranchlabels(L, 1)
tbc <- paste0("[", tb, "]")
text(vertices(L), labels=tbc, cex=2)
# prune tree
tp <- treeprune(L, root=1, 1)
plot(tp, add=TRUE, col="blue", lwd=3)
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