continuum_removal: Continuum removal

In spectacles: Storing, Manipulating and Analysis Spectroscopy and Associated Data

Continuum removal

Description

Operates a continuum removal on a vector.

Usage

continuum_removal(x, wl = as.numeric(names(x)), upper = TRUE)

Arguments

x	a numeric vector
wl	the wavelengths of the spectra
upper	if TRUE, removes the upper convex hull from the spectra, if FALSE, takes the lower convex hull

Details

This operation is commonly done to normalize reflectance spectra and allow comparison of individual absorption features from a common baseline. The removal is based on the upper convex hull of the spectra.

This function is working on vectors. It may applied on matrix or data.frames using the apply function, or on Spectra* objects using the apply_spectra function.

Value

A numeric vector with its continuum removed.

Author(s)

Pierre Roudier [e-mail], based on code from Raphael Viscarra-Rossel.

References

Clark, R.N., and Roush, T.L. 1984. Reflectance spectroscopy: Quantitative analysis techniques for remote sensing applications. Journal of Geophysical Research 89, 6329–6340.

See Also

baseline, snv, rnv

Examples

# Loading example data
data(australia)
spectra(australia) <- sr_no ~ ... ~ 350:2500

s <- apply_spectra(australia, continuum_removal)
plot(s)

s <- apply_spectra(australia, continuum_removal, upper = FALSE)
plot(s)

spectacles documentation built on July 10, 2023, 1:59 a.m.