Statistical Patterns in Genomic Sequences

agct.test | Test of Purine-Pyrimidine Parity Based on Euclidean distance |

ag.test | Test of Purine-Pyrimidine Parity Based on Purine Count |

array2vector | Convert Arrays and Tables to Vectors with Named Elements |

chargaff0.test | Vector Test of Chargaff's Second Parity Rule (CSPR) for... |

chargaff1.test | Matrix Test of CSPR for Mononucleotides |

chargaff2.test | Matrix Test of CSPR for Dinucleotides |

chargaff.gibbs.test | Test of CSPR for Dinucleotides Under Gibbs Distribution |

chisq.unif.test | Test of Uniformity Based on Pearsons's Chi-Squared test |

complement | Complement of a DNA/RNA Sequence |

cylinder.counts | Count Cylinders (Fixed-Offset Patterns) in Character Vectors |

diffsign.test | the Differents-Sign Test of Statistical Independence |

diid.disturbance | Construct feasible Random Noise Generating a Bernoulli... |

diid.test | A Test for a Bernoulli Scheme (IID Sequence) |

disambiguate | Disambiguate a Nucleic Sequence |

estimateMarkovChain | Fit a first-Order Markov Chain to a Sequence of Finite... |

ks.unif.test | Using 'ks.test' to test for Uniformity on the Unit Interval |

lb.test | The Ljung-Box Test for Uncorrelated Data |

markov.disturbance | Construct feasible Random Noise Generating a First-Order... |

markov.test | A Test for First-Order Markovianness |

nanoarchaeum | DNA sequence for the Nanoarchaeum equitans Kin4-M Chromosome |

oligoProfile | Oligo Profiles and Oligo Profile Correlation Plots of... |

pair.counts | Count Pairs in Character Vectors |

pieris | DNA sequence for the Pieris Rapae Granulovirus Genome |

quadruple.counts | Count Quadruplets in Character Vectors |

rank.test | The Rank Test of Statistical Independence |

rcspr2mat | Random Stochastic Matrices Complying with Chargaff's Second... |

reverseComplement | Reverse Complement of a DNA/RNA Sequence |

rstochmat | Random Generation of Stochastic Matrices |

rstochvec | Random Generation of Stochastic (Probability) Vectors |

simulateMarkovChain | Simulate a first-Order Markov Chain |

spgs-package | Statistical Patterns in Genomic Sequences |

triple.counts | Count Triplets in Character Vectors |

turningpoint.test | The Turning Point Test of Statistical Independence |

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