spm12r: Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Version 2.3.1

Installs 'SPM12' to the R library directory and has associated functions for 'fMRI' and general imaging utilities, called through 'MATLAB'.

AuthorJohn Muschelli
Date of publication2017-03-07 00:36:56
MaintainerJohn Muschelli <muschellij2@gmail.com>
LicenseGPL-2 | file LICENCE
Version2.3.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("spm12r")

Getting started

fMRI Preprocessing using SPM 12

Popular man pages

acpc_reorient: AC/PC Reorientation
install_spm12: Install SPM12 file into directory
spm12_coregister: SPM12 Coregister (Estimate and Reslice)
spm12_normalize: SPM12 Normalize (Estimate and Write)
spm12_normalize_write: SPM12 Normalize (Write)
spm12_realign: SPM12 Realign (Estimate and Reslice)
spm_bwlabel: SPM BWLabel Clusters of Certain Size
See all...

All man pages Function index File listing

Man pages

acpc_reorient: AC/PC Reorientation
bwconncomp: Label Connected Clusters of Certain Size
filename_check: Perform filename checks for SPM
group_xyz: Center of Gravity for Multiple Areas
install_spm12: Install SPM12 file into directory
ntime_points: Get number of time points from a file
run_spm12_script: Wrapper for running 'spm12_script'
spm12_coregister: SPM12 Coregister (Estimate and Reslice)
spm12_normalize: SPM12 Normalize (Estimate and Write)
spm12_normalize_est: SPM12 Normalize (Estimate)
spm12_normalize_write: SPM12 Normalize (Write)
spm12_realign: SPM12 Realign (Estimate and Reslice)
spm12_realign_est: SPM12 Realign (Estimate)
spm12_script: Find SPM12 Script
spm12_segment: SPM12 Segment
spm12_slice_timing: SPM12 Slice Timing Correction
spm12_smooth: SPM12 Smooth
spm_bwlabel: SPM BWLabel Clusters of Certain Size
spm_dir: Get SPM12 Directory
spm_probs_to_seg: SPM Probability to Hard Segmentation

Functions

acpc_reorient Man page Source code
bwconncomp Man page Source code
filename_check Man page Source code
group_xyz Man page Source code
install_spm12 Man page Source code
ntime_points Man page Source code
run_spm12_script Man page Source code
spm12_coregister Man page Source code
spm12_normalize Man page Source code
spm12_normalize_est Man page Source code
spm12_normalize_write Man page Source code
spm12_realign Man page Source code
spm12_realign_est Man page Source code
spm12_script Man page Source code
spm12_segment Man page Source code
spm12_slice_timing Man page Source code
spm12_smooth Man page Source code
spm_bwlabel Man page Source code
spm_dir Man page Source code
spm_probs_to_seg Man page Source code

Files

inst
inst/scripts
inst/scripts/First_Level.m
inst/scripts/Segment_job.m
inst/scripts/OldNorm_job.m
inst/scripts/Coregister_job.m
inst/scripts/Realign_Estimate_job.m
inst/scripts/Normalize_Estimate_and_Write_job.m
inst/scripts/Normalize_Write_job.m
inst/scripts/Slice_Timing_job.m
inst/scripts/Smooth_job.m
inst/scripts/Coregistration_job.m
inst/scripts/Realign_job.m
inst/scripts/First_Level_job.m
inst/scripts/Normalize_Estimate_job.m
inst/scripts/Executable.m
inst/doc
inst/doc/fmri_processing_spm12r.html
inst/doc/fmri_processing_spm12r.Rmd
inst/doc/fmri_processing_spm12r.R
NAMESPACE
R
R/spm_dir.R
R/spm12_script.R
R/spm12_slice_timing.R
R/spm_probs_to_seg.R
R/spm_bwlabel.R
R/spm12_normalize_est.R
R/ntime_points.R
R/spm12_coregister.R
R/spm12_smooth.R
R/bwconncomp.R
R/run_spm12_script.R
R/install_spm12.R
R/spm12_realign_est.R
R/spm12_segment.R
R/spm12_normalize.R
R/spm12_normalize_write.R
R/spm12_realign.R
R/acpc_reorient.R
R/group_xyz.R
R/check_filename.R
vignettes
vignettes/fmri_processing_spm12r.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
LICENCE
man
man/run_spm12_script.Rd
man/spm_dir.Rd
man/spm12_coregister.Rd
man/spm_bwlabel.Rd
man/spm_probs_to_seg.Rd
man/spm12_realign_est.Rd
man/spm12_script.Rd
man/acpc_reorient.Rd
man/filename_check.Rd
man/spm12_slice_timing.Rd
man/install_spm12.Rd
man/spm12_normalize_write.Rd
man/spm12_normalize.Rd
man/spm12_realign.Rd
man/spm12_segment.Rd
man/group_xyz.Rd
man/bwconncomp.Rd
man/spm12_smooth.Rd
man/ntime_points.Rd
man/spm12_normalize_est.Rd
spm12r documentation built on May 19, 2017, 6:48 a.m.