Description Usage Arguments Value
View source: R/spm12_slice_timing.R
Performs SPM12 slice timing correction on images
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | spm12_slice_timing.deprecated(
filename,
time_points = NULL,
nslices,
tr,
ta = tr - tr/nslices,
slice_order = 1:nslices,
ref_slice,
prefix = "a",
add_spm_dir = TRUE,
spmdir = spm_dir(verbose = verbose, install_dir = NULL),
clean = TRUE,
verbose = TRUE,
outdir = tempdir(),
retimg = FALSE,
reorient = FALSE,
install_dir = NULL,
...
)
|
filename |
Files to be slice-time corrected |
time_points |
Time points to run slice-time correction.
If |
nslices |
Number of slices in the images |
tr |
Repetition time (in seconds) |
ta |
Time between the first and the last slice within one scan |
slice_order |
Order slices were taken (if not specified, assumed ascending), bottom slice = 1 |
ref_slice |
Reference slice |
prefix |
Prefix to append to front of image filename |
add_spm_dir |
Add SPM12 directory from this package |
spmdir |
SPM dir to add, will use package default directory |
clean |
Remove scripts from temporary directory after running |
verbose |
Print diagnostic messages |
outdir |
Directory to copy results |
retimg |
(logical) return image of class nifti |
reorient |
(logical) If retimg, should file be
reoriented when read in?
Passed to |
install_dir |
directory to download SPM12 |
... |
Arguments passed to |
Output filenames
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