spm12_smooth: SPM12 Smooth

In spm12r: Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'

Description

Performs SPM12 Smoothing on an Image

Usage

spm12_smooth(
  filename,
  retimg = FALSE,
  fwhm = 8,
  dtype = c("SAME", "UINT8", "INT16", "INT32", "FLOAT32", "FLOAT64"),
  implicit_mask = FALSE,
  prefix = "s",
  add_spm_dir = TRUE,
  spmdir = spm_dir(verbose = verbose, install_dir = install_dir),
  clean = TRUE,
  verbose = TRUE,
  reorient = FALSE,
  install_dir = NULL,
  ...
)

Arguments

filename	File to be smoothed
retimg	Logical indicating if image should be returned or result from run_matlab_script
fwhm	Full-Width Half Max to smooth
dtype	data type for the output format
implicit_mask	Should an implicit mask be used. An "implicit mask" is a mask implied by a particular voxel value (0 for images with integer type, NaN for float images).
prefix	Prefix to append to front of image filename
add_spm_dir	Add SPM12 directory from this package
spmdir	SPM dir to add, will use package default directory
clean	Remove scripts from temporary directory after running
verbose	Print diagnostic messages
reorient	if retimg=TRUE pass to readNIfTI
install_dir	directory to download SPM12
...	Arguments passed to run_spm12_script readNIfTI

Value

Result from run_matlab_script or nifti file, depending on retimg

spm12r documentation built on March 4, 2021, 9:11 a.m.