R/data.R

In ssMutPA: Single-Sample Mutation-Based Pathway Analysis

#' @title mut_status A binary mutation matrix.
#' @description The mut_status is a binary mutation matrix,in which 1 represents mutation and 0 represents wild type.
#' @usage mut_status
"mut_status"

#' @title Path_ES Single-sample mutation-based pathway enrichment score profiles.
#' @description The Path_ES is used for clustering and other analysis .
#' @usage Path_ES
"Path_ES"

#' @title RWR_res Random walk results based on mutated genes in a single sample.
#' @description The RWR_res is random walk results,used for enrichment analysis .
#' @usage RWR_res
"RWR_res"

#' @title Seeds_Score The local weight of seed nodes.
#' @description Seeds_Score
#' @usage Seeds_Score
"Seeds_Score"

#' @title cox_data Univariate cox proportional hazards regression data.
#' @description A data frame for implementing univariate cox proportional hazards regression.
#' @usage cox_data
"cox_data"

#' @title dot_data A data frame.
#' @description The data frame was used to plot a dot plot.
#' @usage dot_data
"dot_data"

#' @title sample_class The subtype labels of samples.
#' @description The subtype labels of samples.
#' @usage sample_class
"sample_class"

#' @title mut_onco A binary mutation matrix.
#' @description mut_onco is used to calculate the mutation frequency of genes..
#' @usage mut_onco
"mut_onco"

#' @title samp_class_onco
#' @description Sample subtype labels.
#' @usage samp_class_onco
"samp_class_onco"

#' @title sur_onco
#' @description Patient survival-related information.
#' @usage sur_onco
"sur_onco"

#' @title Path_Name
#' @description The pathway names that the user wants to display.
#' @usage Path_Name
"Path_Name"