ssa: Simultaneous Signal Analysis
Version 1.2.1

Procedures for analyzing simultaneous signals, e.g., features that are simultaneously significant in two different studies. Includes methods for detecting simultaneous signals, for identifying them under false discovery rate control, and for leveraging them to improve prediction.

Browse man pages Browse package API and functions Browse package files

AuthorDave Zhao [aut, cre]
Date of publication2016-07-24 01:20:22
MaintainerDave Zhao <sdzhao@illinois.edu>
LicenseGPL-3
Version1.2.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ssa")

Man pages

bi.npmle: Bivariate NPMLE
expit: Expit function
fsdr: False simultaneous discovery rate control
fsdr_all: False simultaneous discovery rate control - report all...
ldd: Latent dependency detection
logit: Logit function
maxtest: Max test for detecting simultaneous signals
neb.predict: Nonparametric empirical Bayes classifier without annotations;...
neb.train: Nonparametric empirical Bayes classifier without annotations;...
nebula.bin.predict: Nonparametric empirical Bayes classifier using latent...
nebula.bin.train: Nonparametric empirical Bayes classifier using latent...
nebula.chisq.bin.predict: Nonparametric empirical Bayes classifier using latent...
nebula.chisq.bin.train: Nonparametric empirical Bayes classifier using latent...
nebula.chisq.predict: Nonparametric empirical Bayes classifier using latent...
nebula.chisq.train: Nonparametric empirical Bayes classifier using latent...
nebula.predict: Nonparametric empirical Bayes classifier using latent...
nebula.train: Nonparametric empirical Bayes classifier using latent...
prs.predict: Polygenic risk score; prediction
prs.predict.cv: Polygenic risk score; prediction for classifier trained with...
prs.train: Polygenic risk score (given only allele frequencies);...
prs.train.cv: Polygenic risk score (given only allele frequencies);...
tri.npmle: Trivariate NPMLE
uni.npmle: Univariate NPMLE

Functions

bi.npmle Man page Source code
expit Man page Source code
fsdr Man page Source code
fsdr_all Man page Source code
ldd Man page Source code
logit Man page Source code
maxtest Man page Source code
neb.predict Man page Source code
neb.train Man page Source code
nebula.bin.predict Man page Source code
nebula.bin.train Man page Source code
nebula.chisq.bin.predict Man page Source code
nebula.chisq.bin.train Man page Source code
nebula.chisq.predict Man page Source code
nebula.chisq.train Man page Source code
nebula.predict Man page Source code
nebula.train Man page Source code
prs.predict Man page Source code
prs.predict.cv Man page Source code
prs.train Man page Source code
prs.train.cv Man page Source code
tri.npmle Man page Source code
uni.npmle Man page Source code

Files

src
src/fsdr.c
src/ldd.c
NAMESPACE
R
R/npmle.R
R/ldd.R
R/nebula.R
R/fsdr.R
R/maxtest.R
R/prs.R
R/neb.R
R/link_fxns.R
MD5
DESCRIPTION
man
man/nebula.chisq.train.Rd
man/prs.predict.Rd
man/nebula.bin.train.Rd
man/neb.train.Rd
man/maxtest.Rd
man/prs.train.cv.Rd
man/prs.predict.cv.Rd
man/ldd.Rd
man/fsdr.Rd
man/prs.train.Rd
man/nebula.chisq.bin.train.Rd
man/tri.npmle.Rd
man/expit.Rd
man/logit.Rd
man/uni.npmle.Rd
man/bi.npmle.Rd
man/nebula.chisq.predict.Rd
man/fsdr_all.Rd
man/nebula.bin.predict.Rd
man/nebula.chisq.bin.predict.Rd
man/nebula.train.Rd
man/neb.predict.Rd
man/nebula.predict.Rd
ssa documentation built on May 19, 2017, 8:14 p.m.