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ssdGSA: Single Sample Directional Gene Set Analysis
A method that inherits the standard gene set variation analysis (GSVA) method and also provides the option to use summary statistics from any analysis (disease vs healthy, lesional side vs nonlesional side, etc..) input to define the direction of gene sets used for directional gene set score calculation for a given disease. Note to use this package, GSVA(>= 1.52.1) is needed to pre-installed. Hanzelmann, S., Castelo, R., and Guinney, J. (2013) <doi:10.1186/1471-2105-14-7>.
Getting started
Browse package contents
Package details |
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| Author | Xingpeng Li [aut, cre], Qi Qian [aut] |
| Maintainer | Xingpeng Li <xingpeng.li@pfizer.com> |
| License | GPL-2 |
| Version | 0.1.1 |
| Package repository | View on CRAN |
| Installation |
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