check_genes_missing_total: Function to Check if 100% of Genes in Gene Sets Have Missing...
In ssdGSA: Single Sample Directional Gene Set Analysis
check_genes_missing_total R Documentation
Function to Check if 100% of Genes in Gene Sets Have Missing Information in Data Matrix
Description
This function is to check if 100% of genes in gene sets to be analyzed have missing information in data matrix.
Usage
check_genes_missing_total(Gene_sets, Data)
Arguments
Gene_sets
A list of gene sets to be analyzed, with gene set names as component names, and each component is a vector
of gene entrez ID.
Data
Data matrix of gene expressions with gene ensembl ID as row names and columns corresponding to different samples.
Details
Before single sample directional gene set analysis, it is necessary to check if genes in the gene sets have missing information in
data matrix. If a gene set has 100% information missing in the data matrix, the name of the gene set will be returned as a list named
'Total_missing_in_data_matrix'; If no such gene sets exist, nothing will be returned.
Value
A list 'Total_missing_in_data_matrix' with names of the gene sets that have 100% of genes that have information missing in the data matrix will be
returned. If there are no such gene sets, NULL list will be returned.
ssdGSA documentation built on Sept. 11, 2024, 7:57 p.m.
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| check_genes_missing_total | R Documentation |
Function to Check if 100% of Genes in Gene Sets Have Missing Information in Data Matrix
Description
This function is to check if 100% of genes in gene sets to be analyzed have missing information in data matrix.
Usage
check_genes_missing_total(Gene_sets, Data)
Arguments
Gene_sets |
A list of gene sets to be analyzed, with gene set names as component names, and each component is a vector of gene entrez ID. |
Data |
Data matrix of gene expressions with gene ensembl ID as row names and columns corresponding to different samples. |
Details
Before single sample directional gene set analysis, it is necessary to check if genes in the gene sets have missing information in data matrix. If a gene set has 100% information missing in the data matrix, the name of the gene set will be returned as a list named 'Total_missing_in_data_matrix'; If no such gene sets exist, nothing will be returned.
Value
A list 'Total_missing_in_data_matrix' with names of the gene sets that have 100% of genes that have information missing in the data matrix will be returned. If there are no such gene sets, NULL list will be returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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