gene_sets: This is data to be included in package

In ssdGSA: Single Sample Directional Gene Set Analysis

This is data to be included in package

Description

This is data to be included in package

Usage

gene_sets

Format

An example disease gene sets in the form of a list, with gene set names as list component names, and each component is a vector of gene entrez ID. In this sample gene sets list, there are 10 gene sets in total.

TCELL.KEGG_T_CELL_RECEPTOR_SIGNALING_PATHWAY

gene entrez ID related to this pathway

TLR.KEGG_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY

gene entrez ID related to this pathway

BCELL.KEGG_B_CELL_RECEPTOR_SIGNALING_PATHWAY

gene entrez ID related to this pathway

NEUROTROPHIN.KEGG_NEUROTROPHIN_SIGNALING_PATHWAY

gene entrez ID related to this pathway

ERBB.KEGG_ERBB_SIGNALING_PATHWAY

gene entrez ID related to this pathway

CALCIUM.KEGG_CALCIUM_SIGNALING_PATHWAY

gene entrez ID related to this pathway

CHEMOKINE.KEGG_CHEMOKINE_SIGNALING_PATHWAY

gene entrez ID related to this pathway

GNRH.KEGG_GNRH_SIGNALING_PATHWAY

gene entrez ID related to this pathway

VEGF.KEGG_VEGF_SIGNALING_PATHWAY

gene entrez ID related to this pathway

ssdGSA documentation built on Sept. 11, 2024, 7:57 p.m.