median_expression: Function to Calculate Median of Gene Expressions
In ssdGSA: Single Sample Directional Gene Set Analysis
median_expression R Documentation
Function to Calculate Median of Gene Expressions
Description
This function is to calculate the median of gene expressions for genes in the given gene sets.
Usage
median_expression(Data, pathway.db)
Arguments
Data
Data matrix of gene expressions with gene ensembl ID as row names and columns corresponding to different samples.
pathway.db
A list of gene sets.
Details
Within the ssdGSA function, when GSA_method = "median.exprs", this function is used to calculate the average of
gene expressions for genes in the given gene sets.
Value
Matrix of average gene expression in each gene set with rows corresponding to gene sets and columns corresponding to
samples will be returned.
ssdGSA documentation built on Sept. 11, 2024, 7:57 p.m.
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| median_expression | R Documentation |
Function to Calculate Median of Gene Expressions
Description
This function is to calculate the median of gene expressions for genes in the given gene sets.
Usage
median_expression(Data, pathway.db)
Arguments
Data |
Data matrix of gene expressions with gene ensembl ID as row names and columns corresponding to different samples. |
pathway.db |
A list of gene sets. |
Details
Within the ssdGSA function, when GSA_method = "median.exprs", this function is used to calculate the average of gene expressions for genes in the given gene sets.
Value
Matrix of average gene expression in each gene set with rows corresponding to gene sets and columns corresponding to samples will be returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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