check_gene_name_match_noDir: Function to Check if Gene IDs in the Input Gene Data Match...

In ssdGSA: Single Sample Directional Gene Set Analysis

Function to Check if Gene IDs in the Input Gene Data Match Well When Direction Matrix Is Missing

Description

This function is to check if the gene IDs in the gene sets and data matrix match well.

Usage

check_gene_name_match_noDir(genes_in_Gene_sets, genes_in_Data)

Arguments

genes_in_Gene_sets	A list of gene names from the gene sets.
genes_in_Data	A list of gene names from the data matrix.

Details

Before single sample directional gene set analysis, it is necessary to check whether the gene ID types in the in the gene sets, data matrix and direction matrix have the same ID type. If not, users should double check to make gene ID types match one another.

Value

If there are more than 10\ the single sample directional gene set analysis would stop.

ssdGSA documentation built on Sept. 11, 2024, 7:57 p.m.