Man pages for statgenHTP
High Throughput Phenotyping (HTP) Data Analysis
| as.data.frame.TP | Coerce TP object to data.frame |
| countValid | Count valid observations per time point for a given trait |
| countValidPlot | Count valid observations per plotId for a given trait |
| createTimePoints | Create an object of class TP |
| detectSerieOut | Detect outliers for series of observations |
| detectSingleOut | Detect outliers for single observations |
| detectSingleOutMaize | detectSingleOutMaize |
| estimateSplineParameters | Extract estimates from fitted splines. |
| fitModels | Fit spatial models per time point |
| fitSpline | Fit Splines |
| fitSplineHDM | Fit P-Spline Hierarchical Curve Data Models |
| getCorrected | Extract corrected phenotypic values |
| getEffDims | Extract effective dimensions |
| getGenoPred | Extract predicted genotypic values |
| getHerit | Extract heritabilities |
| getTimePoints | Extract time points |
| getVar | Extract variances |
| noCorrectedRoot | Root data corrected for outliers for single observations. |
| PhenoarchDat1 | Greenhouse data for a maize experiment in the PhenoArch... |
| PhenovatorDat1 | Growth chamber data for an Arabidopsis experiment in the... |
| plot.fitMod | Plot function for class fitMod |
| plot.HTPSpline | Plot the results of a fitted spline. |
| plot.psHDM | Plot function for class psHDM |
| plot.serieOut | Plot outliers for series of observations |
| plot.singleOut | Plot outliers for single observations |
| plot.splineEst | Plot the results of estimated spline parameters. |
| plot.TP | Plot function for class TP |
| predict.psHDM | Predict the P-Splines Hierarchical Curve Data Model |
| removeSerieOut | Replace outliers for series of observations by NA |
| removeSingleOut | Replace outliers for single observations by NA |
| removeTimePoints | Remove time points from an object of class TP |
| RootDat1 | Greenhouse data for an experiment in the RootPhAir platform. |
| spatCorrectedArch | Maize data corrected for spatial trends. |
| spatCorrectedVator | Arabidopsis data corrected for spatial trends. |
| spatPredArch | Maize data, genotypic predictions. |
| statgenHTP-package | statgenHTP: High Throughput Phenotyping (HTP) Data Analysis |
| summary.fitMod | Summary function for fitMod objects |
| summary.TP | Summary function for TP objects |
