countValidPlot: Count valid observations per plotId for a given trait

In statgenHTP: High Throughput Phenotyping (HTP) Data Analysis

Count valid observations per plotId for a given trait

Description

Count valid observations per plotId for a given trait.

Usage

countValidPlot(TP, trait, plotIds = NULL)

Arguments

TP	An object of class TP.
trait	A character string indicating the trait for which valid observations should be counted.
plotIds	A character vector indicating the plotIds for which valid observations should be checked. If NULL valid observations are counted for all plotIds in TP.

Value

A named numerical vector with he number of valid observations per plotId.

Examples

## Create a TP object containing the data from the Phenovator.
phenoTP <- createTimePoints(dat = PhenovatorDat1,
                            experimentName = "Phenovator",
                            genotype = "Genotype",
                            timePoint = "timepoints",
                            repId = "Replicate",
                            plotId = "pos",
                            rowNum = "y", colNum = "x",
                            addCheck = TRUE,
                            checkGenotypes = c("check1", "check2",
                                               "check3", "check4"))
## Count valid observations for EffpsII for a subset of plots.
countValidPlot(phenoTP,
               trait = "EffpsII",
               plotIds = c("c12r22", "c24r41", "c14r32"))

statgenHTP documentation built on April 14, 2023, 9:12 a.m.