PhenovatorDat1: Growth chamber data for an Arabidopsis experiment in the...

Description Usage Format References

Description

A dataset containing data from a growth chamber experiment with Arabidopsis in the Phenovator platform (WUR, Netherlands, Flood et al. 2016). It consists of one experiment with 1,440 plants grown in a growth chamber. The number of tested genotypes is 192 with 6 to 7 replicates per genotype. Four reference genotypes were also tested with 15 or 30 replicates. The studied trait is the photosystem II efficiency (EffpsII) extracted from the pictures over time (van Rooijen et al. 2017). This dataset was kindly provided by René Boesten and Mark Aarts.

Usage

1

Format

A data.frame with 103,839 rows and 10 columns:

Genotype

Genotypes

Basin

Table of experiment

Replicate

Block define after sowing for post-blocking. They are not full-resolvable blocks.

Image_pos

Position of the camera

x

Row coordinate

y

Column coordinate

Sowing_Position

Unique pot ID

timepoints

time of picture

EffpsII

Efficiency of the photosystem II

pos

Unique pot ID using rowcol coordinates

References

Rooijen, Roxanne van, Willem Kruijer, René Boesten, Fred A. van Eeuwijk, Jeremy Harbinson, and Mark G. M. Aarts. 2017. “Natural Variation of YELLOW SEEDLING1 Affects Photosynthetic Acclimation of Arabidopsis Thaliana.” Nature Communications 8 (1). doi: 10.1038/s41467-017-01576-3

Flood, Pádraic J., Willem Kruijer, Sabine K. Schnabel, Rob van der Schoor, Henk Jalink, Jan F. H. Snel, Jeremy Harbinson, and Mark G. M. Aarts. 2016. “Phenomics for Photosynthesis, Growth and Reflectance in Arabidopsis Thaliana Reveals Circadian and Long-Term Fluctuations in Heritability.” Plant Methods 12 (1): 14. doi: 10.1186/s13007-016-0113-y


statgenHTP documentation built on Sept. 15, 2021, 5:06 p.m.