Nothing
# Function ----
test_that("dca0 is valid function", {
expect_function(
dca0,
args = c("n", "H_counts", "N", "S", "rho", "rho2", "details")
)
})
# H_counts = 1 ----
test_that("dca0 works for H_counts=c(1), n<n_max", {
H_counts <- c(1)
N <- 10
S <- 5
rho <- 8
n <- 3
expect_identical(dca0(n, H_counts, N, S, rho, rho^2), n)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 9.114583,
k = 0.48,
v = 1,
s = 0.48,
x = n
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-7)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(1L, 1L))
})
test_that("dca0 works for H_counts=c(1), n=n_max", {
H_counts <- c(1)
N <- 10
S <- 5
rho <- 8
n <- dca_nmax(H_counts, N, S) # 10
expect_identical(dca0(n, H_counts, N, S, rho, rho^2), n)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 0,
k = 1.6,
v = 1,
s = 1.6,
x = n
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-7)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(1L, 1L))
})
# H_counts = 2 ----
test_that("dca0 works for H_counts=2, n<n_max", {
H_counts <- 2
N <- c(10, 20)
S <- c(5, 9)
rho <- 8
n <- 14
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(3.043478, 10.956522)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 29.82143,
k = 0.4869565,
v = 1,
s = 0.4869565,
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-7)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(1L, 1L))
})
test_that("dca0 works for H_counts=2, n=n_max", {
H_counts <- 2
N <- c(10, 20)
S <- c(5, 9)
rho <- 8
n <- dca_nmax(H_counts, N, S) # 28.28877
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(6.149733, 22.139037)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 0,
k = 0.9839572,
v = 1,
s = 0.9839572,
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-7)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(1L, 1L))
})
test_that("dca0 works for H_counts=2, n>n_max", {
H_counts <- 2
N <- c(10, 20)
S <- c(5, 9)
rho <- 8
n <- 29
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(6.304348, 22.695652)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = -0.7165948,
k = 1.008696,
v = 1,
s = 1.008696,
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(1L, 1L))
})
test_that("dca0 works for H_counts=2, n=sum(N)", {
H_counts <- 2
N <- c(10, 20)
S <- c(5, 9)
rho <- 8
n <- sum(N)
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(6.521739, 23.478261)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = -1.666667,
k = 1.043478,
v = 1,
s = 1.043478,
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(1L, 1L))
})
# H_counts = c(1,1) ----
test_that("dca0 works for H_counts=c(1,1), n<n_max", {
H_counts <- c(1, 1)
N <- c(10, 20)
S <- c(5, 9)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- 16
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(5.941302, 10.058698)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 106.7395,
k = -0.263501,
v = c(-0.5704128, -0.8213582),
s = c(0.1503044, 0.2164287),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
test_that("dca0 works for H_counts=c(1,1), n=n_max", {
H_counts <- c(1, 1)
N <- c(10, 20)
S <- c(5, 9)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- dca_nmax(H_counts, N, S) # 30
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- N
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 0,
k = -0.4991845,
v = c(-0.506791, -0.862069),
s = c(0.2529822, 0.4303315),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-7)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
# H_counts = c(1,2) ----
test_that("dca0 works for H_counts=c(1,2), n<n_max", {
H_counts <- c(1, 2)
N <- c(10, 20, 15)
S <- c(5, 9, 15)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- 12
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(1.754532, 4.553542, 5.691927)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 734.3011,
k = 0.107562,
v = c(0.4126600, 0.9108851),
s = c(0.04438653, 0.09797661),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
test_that("dca0 works for H_counts=c(1,2), n=n_max", {
H_counts <- c(1, 2)
N <- c(10, 20, 15)
S <- c(5, 9, 15)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- dca_nmax(H_counts, N, S) # 42.83784
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(10, 14.59459, 18.24324)
expect_equal(result, expected, tolerance = 10^-6)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = -1.421085e-14,
k = -0.4032519,
v = c(-0.6273552, -0.7787332),
s = c(0.2529822, 0.31402576),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
test_that("dca0 works for H_counts=c(1,2), n>n_max", {
H_counts <- c(1, 2)
N <- c(10, 20, 15)
S <- c(5, 9, 15)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- 43
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(10.06395, 14.63824, 18.29780)
expect_equal(result, expected, tolerance = 10^-6)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = -0.9929328,
k = -0.4049989,
v = c(-0.6286441, -0.7776931),
s = c(0.2546001, 0.3149648),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
test_that("dca0 works for H_counts=c(1,2), n=sum(N)", {
H_counts <- c(1, 2)
N <- c(10, 20, 15)
S <- c(5, 9, 15)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- sum(N) # 45
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(10.87450, 15.16689, 18.95861)
expect_equal(result, expected, tolerance = 10^-6)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = -12.56518,
k = -0.426826,
v = c(-0.6445375, -0.7645727),
s = c(0.2751054, 0.3263395),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
# H_counts = c(2,2) ----
test_that("dca0 works for H_counts=c(2,2), n<n_max", {
H_counts <- c(2, 2)
N <- c(10, 20, 15, 40)
S <- c(5, 9, 15, 2)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- 30
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(4.496045, 16.185762, 6.874077, 2.444116)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 429.8772,
k = -0.1641283,
v = c(-0.6930063, -0.7209315),
s = c(0.1137419, 0.1183253),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
test_that("dca0 works for H_counts=c(2,2), n=n_max", {
H_counts <- c(2, 2)
N <- c(10, 20, 15, 40)
S <- c(5, 9, 15, 2)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- dca_nmax(H_counts, N, S) # 54.60419
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(6.149733, 22.139037, 19.413013, 6.902405)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = 0,
k = -0.3686028,
v = c(-0.4220730, -0.90656182),
s = c(0.1555773, 0.3341612),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-7)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
test_that("dca0 works for H_counts=c(2,2), n>n_max", {
H_counts <- c(2, 2)
N <- c(10, 20, 15, 40)
S <- c(5, 9, 15, 2)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- 70
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(6.597173, 23.749824, 29.252215, 10.400788)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = -79.26825,
k = -0.5304648,
v = c(-0.3146236, -0.9492165),
s = c(0.1668968, 0.5035260),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
test_that("dca0 works for H_counts=c(2,2), n=sum(N)", {
H_counts <- c(2, 2)
N <- c(10, 20, 15, 40)
S <- c(5, 9, 15, 2)
rho <- c(2, 5) * sqrt(c(0.4, 0.6))
n <- sum(N) # 85
result <- dca0(n, H_counts, N, S, rho, rho^2)
expected <- c(6.851509, 24.665431, 39.454717, 14.028344)
expect_equal(result, expected, tolerance = 10^-7)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expected_details <- list(
lambda = -119.7109,
k = -0.7009141,
v = c(-0.2472928, -0.9689408),
s = c(0.1733310, 0.6791443),
x = expected
)
elements <- names(expected_details)
expect_equal(result_details[elements], expected_details, tolerance = 10^-6)
# Check details: D.matrix.
expect_identical(dim(result_details$D.matrix), c(2L, 2L))
})
# pop9d278s ----
test_that("dca0 works for pop9d278s, n<n_max", {
H_counts <- pop9d278s$H_counts
N <- pop9d278s$N
S <- pop9d278s$S
rho <- pop9d278s$rho
n <- 1000
result <- dca0(n, H_counts, N, S, rho, rho^2)
expect_snapshot(result)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expect_snapshot(result_details)
})
test_that("dca0 works for pop9d278s, n=n_max", {
H_counts <- pop9d278s$H_counts
N <- pop9d278s$N
S <- pop9d278s$S
rho <- pop9d278s$rho
n <- pop9d278s$n_max
result <- dca0(n, H_counts, N, S, rho, rho^2)
expect_snapshot(result)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expect_snapshot(result_details)
})
test_that("dca0 works for pop9d278s, n>n_max", {
H_counts <- pop9d278s$H_counts
N <- pop9d278s$N
S <- pop9d278s$S
rho <- pop9d278s$rho
n <- 20000
result <- dca0(n, H_counts, N, S, rho, rho^2)
expect_snapshot(result)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expect_snapshot(result_details)
})
test_that("dca0 works for pop9d278s, n=sum(N)", {
H_counts <- pop9d278s$H_counts
N <- pop9d278s$N
S <- pop9d278s$S
rho <- pop9d278s$rho
n <- sum(N)
result <- dca0(n, H_counts, N, S, rho, rho^2)
expect_snapshot(result)
# Check details.
result_details <- dca0(n, H_counts, N, S, rho, rho^2, TRUE)
expect_snapshot(result_details)
})
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