Man pages for surface
Fitting Hansen Models to Investigate Convergent Evolution
| convertTreeData | Utilities for Formatting Objects for SURFACE Analysis |
| getAIC | Akaike's Information Criterion for SURFACE Models |
| getBranchTimes | Extract Branching Times from an 'ouch' Tree |
| ouchDescendants | Obtain Descendants from an 'ouch' Tree |
| propRegMatch | Similarity of Two Hansen Models |
| repaint | Paint the Branches of a Tree |
| runSurface | Run All Steps of a SURFACE Analysis |
| startingModel | Create an Initial Model for a SURFACE Analysis |
| surfaceAICPlot | Plot the AIC Throughout a SURFACE Analysis |
| surfaceBackward | Collapsing Convergent Regimes in a Hansen Model |
| surfaceDemo | Tree and Data for Demonstrating SURFACE |
| surfaceForward | Adding Regimes to a Hansen Model |
| surface-package | Fitting Hansen Models to Investigate Convergent Evolution |
| surfaceSimulate | Simulate Data for SURFACE |
| surfaceSummary | Summarize SURFACE Output |
| surfaceTreePlot | Visualize Results of a SURFACE Analysis |
