getBranchTimes: Extract Branching Times from an 'ouch' Tree

In surface: Fitting Hansen Models to Investigate Convergent Evolution

Extract Branching Times from an ouch Tree

Description

Extracts the time from root of each node in an ouchtree or hansentree formatted phylogenetic tree; used to compute the timing of regime shifts in a Hansen model

Usage

getBranchTimes(h)

Arguments

h	Fitted ouchtree or hansentree object

Value

A vector of branching times

Author(s)

Travis Ingram

References

Ingram, T. & Mahler, D.L. (2013) SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise AIC. Methods in Ecology and Evolution 4: 416-425.

Examples

data(surfaceDemo)
tree<-surfaceDemo$tree
dat<-surfaceDemo$sim$dat
olist<-convertTreeData(tree,dat)
otree<-olist[[1]]
getBranchTimes(otree)

surface documentation built on Sept. 11, 2024, 5:28 p.m.