Akaike's Information Criterion for SURFACE Models
getBranchTimes: Extract Branching Times from an 'ouch' Tree
In surface: Fitting Hansen Models to Investigate Convergent Evolution
Description
Usage
Arguments
Value
Author(s)
References
View source: R/getBranchTimes.R
Description
Extracts the time from root of each node in an ouchtree or hansentree formatted phylogenetic tree; used to compute the timing of regime shifts in a Hansen model
Usage
1
Arguments
h
Fitted ouchtree or hansentree object
Value
A vector of branching times
Author(s)
Travis Ingram
References
Ingram, T. & Mahler, D.L. (2013) SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise AIC. Methods in Ecology and Evolution 4: 416-425.
surface documentation built on May 30, 2017, 1:58 a.m.
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Description Usage Arguments Value Author(s) References
View source: R/getBranchTimes.R
Description
Extracts the time from root of each node in an ouchtree or hansentree formatted phylogenetic tree; used to compute the timing of regime shifts in a Hansen model
Usage
1 |
Arguments
h |
Fitted |
Value
A vector of branching times
Author(s)
Travis Ingram
References
Ingram, T. & Mahler, D.L. (2013) SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise AIC. Methods in Ecology and Evolution 4: 416-425.
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