Data simulated using real genotypes from 10,000 individuals and 200 SNPs. One SNP have non-zero effect on the multivariate response. The response data are generated under a linear regression model. There is also one SNP with flipped allele between summary statistics and the reference panel.
SummaryConsistency is a list with the following
z-scores computed by fitting univariate simple regression variable-by-variable.
LD matrix estimated from the reference panel.
The index of the SNP with the flipped allele.
The index of the SNP with the non-zero effect.
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