SummaryConsistency | R Documentation |

Data simulated using real genotypes from 10,000 individuals and 200 SNPs. One SNP have non-zero effect on the multivariate response. The response data are generated under a linear regression model. There is also one SNP with flipped allele between summary statistics and the reference panel.

`SummaryConsistency`

is a list with the following
elements:

- z
z-scores computed by fitting univariate simple regression variable-by-variable.

- ldref
LD matrix estimated from the reference panel.

- flip_id
The index of the SNP with the flipped allele.

- signal_id
The index of the SNP with the non-zero effect.

A similar data set with more samples is used in the “Diagnostic for fine-mapping with summary statistics” vignette.

data(SummaryConsistency)

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