getGpr1iso: Choose the the smallest isoenzyme

In sybilccFBA: Cost Constrained Flux Balance Analysis (ccFBA): MetabOlic Modeling with ENzyme kineTics (MOMENT)

Description

preprocessing of model to get the minimal cost iso enzyme and eliminate the OR from GPR's.

Usage

getGpr1iso(model, cpx_stoich, MW)

Arguments

model	object of class modelorg representing the metabolic network.
cpx_stoich	giving the stoichiometry of complexes: data frame containing at least two columns 'genes','stoich' 1/10/2015 'gene' : delimited string of genes(ordered by geneid(e.g bnumber)), 'stoich': number of subunits of each gene in the same order in 'genes'
MW	MW measurement for gene using readfaa.r, calc_MW or gene annotation [units g/mmol]

Value

return a LIST:

gpr1iso	data frame containing the choosen term (complex or isoenzyme)
mod_cpx_mw	molecular weight of isoenzyme
rgst	matrix of reaction gene with stoichiometry

Author(s)

Abdelmoneim Amer Desouki

See Also

getccFBA_mat

sybilccFBA documentation built on Dec. 16, 2019, 1:34 a.m.