initialize-methods: Initialize Problem Object

Description Usage Arguments Author(s) See Also

Description

Initialize ccFBA Problem.

Usage

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## S4 method for signature 'sysBiolAlg_ccFBA'
initialize(.Object, model, LHS, rlb, rub, rtype, lb, ub, obj,
                 lpdir, cnames = NULL, rnames = NULL, pname = NULL,
                 scaling = NULL, writeProbToFileName = NULL, ...)

Arguments

.Object

Problem object

model

An object of class modelorg.

lpdir

Single character string containing the direction of optimization. Can be set to "min" or "max".
Default: "max".

LHS

constraint matrix, consists of S matrix and ccFBA constraints

rlb,rub

bounds for constraints (i.e rows)

lb,ub

bounds for variables (i.e columns)

rtype

row constraint type

obj

index of objective

cnames

A character vector giving the variable names. If set to NULL, the reaction id's of model are used.
Default: NULL.

rnames

A character vector giving the constraint names. If set to NULL, the metabolite id's of model are used.
Default: NULL.

pname

A single character string containing a name for the problem object.
Default: NULL.

scaling

Scaling options used to scale the constraint matrix. If set to NULL, no scaling will be performed (see scaleProb).
Default: NULL.

writeProbToFileName

A single character string containing a file name to which the problem object will be written in LP file format.
Default: NULL.

...

Further arguments passed to the initialize method of sysBiolAlg. They are solver, method and solverParm.

Author(s)

Abdelmoneim Amer Desouki

See Also

Constructor function sysBiolAlg and superclass sysBiolAlg.


sybilccFBA documentation built on Dec. 16, 2019, 1:34 a.m.