Man pages for teal.modules.clinical
'teal' Modules for Standard Clinical Outputs

add_exprExpression List
arm_ref_comp_observerObserver for Treatment reference variable
as_numParse text input to numeric vector
bracket_exprExpressions in Brackets
call_concatenateConcatenate expressions via a binary operator
check_arm_ref_compCheck if the Treatment variable is reference or compare
clean_descriptionClean up categorical variable description
color_lab_valuesMapping function for Laboratory Table
column_annotation_labelGet full label, useful for annotating plots
control_tteControl Function for Time-To-Event teal Module
cs_to_des_filterConvert choices_selected to data_extract_spec with only...
cs_to_des_selectConvert choices_selected to data_extract_spec with only...
cs_to_filter_specConvert choices_selected to filter_spec
cs_to_select_specConvert choices_selected to select_spec
default_total_labelDefault string for total column label
ex_dataSimulated 'CDISC' Data for Examples
extract_inputExtracts html id for 'data_extract_ui'
facet_grid_formulaFacetting formula 'x_facet ~ y_facet'
get_g_forest_obj_var_nameUtility function for extracting 'paramcd' for forest plots
get_paramcd_labelExtract the associated parameter value for 'paramcd'
get_var_labelsGet variable labels
h_concat_exprExpression Deparsing
is.cs_or_desWhether object is of class...
make_barchart_simple_call'ggplot2' call to generate simple bar chart
module_argumentsStandard Module Arguments
pipe_exprExpressions as a Pipeline
prepare_armExpression: Arm Preparation
prepare_arm_levelsExpression: Prepare Arm Levels
select_decoratorsSubset decorators based on the scope
split_choicesSplit 'choices_selected' objects with interactions into their...
split_col_exprSplit-Column Expression
split_interactionsSplit interaction terms into their component variables
srv_decorate_teal_dataWrappers around 'srv_transform_teal_data' that allows to...
substitute_namesSubstitute Names in a Quoted Expression
substitute_qSubstitute in Quoted Expressions
teal.modules.clinical-package'teal' Modules for Standard Clinical Outputs
template_abnormalityTemplate: Abnormality Summary Table
template_abnormality_by_worst_gradeTemplate: Laboratory test results with highest grade...
template_adverse_eventsTemplate: Patient Profile Adverse Events Table and Plot
template_a_geeTemplate for Generalized Estimating Equations (GEE) analysis...
template_ancovaTemplate: ANCOVA Summary
template_argumentsStandard Template Arguments
template_basic_infoTemplate: Patient Profile Basic Info
template_binary_outcomeTemplate: Binary Outcome
template_coxreg_mTemplate: Multi-Variable Cox Regression
template_coxreg_uTemplate: Univariable Cox Regression
template_eventsTemplate: Events by Term
template_events_by_gradeTemplate: Events by Grade
template_events_col_by_gradeTemplate: Adverse Events Grouped by Grade with Threshold
template_events_patyearTemplate: Event Rates Adjusted for Patient-Years
template_events_summaryTemplate: Adverse Events Summary
template_exposureTemplate: Exposure Table for Risk management plan
template_fit_mmrmTemplate: Mixed Model Repeated Measurements (MMRM) Analysis
template_forest_rspTemplate: Response Forest Plot
template_forest_tteTemplate: Survival Forest Plot
template_g_ciTemplate: Confidence Interval Plot
template_g_ippTemplate: Individual Patient Plots
template_g_kmTemplate: Kaplan-Meier Plot
template_g_lineplotTemplate: Line Plot
template_laboratoryTemplate: Patient Profile Laboratory Table
template_logisticTemplate: Logistic Regression
template_medical_historyTemplate: Patient Profile Medical History
template_mult_eventsTemplate: Multiple Events by Term
template_patient_timelineTemplate: Patient Profile Timeline Plot
template_prior_medicationTemplate: Patient Profile Prior Medication
template_shift_by_armTemplate: Shift by Arm
template_shift_by_arm_by_worstTemplate: Shift by Arm by Worst Analysis Indicator Level
template_shift_by_gradeTemplate: Grade Summary Table
template_smqTemplate: Adverse Events Table by Standardized MedDRA Query
template_summaryTemplate: Summary of Variables
template_summary_byTemplate: Summarize Variables by Row Groups Module
template_therapyTemplate: Patient Profile Therapy Table and Plot
template_tteTemplate: Time-To-Event
template_vitalsTemplate: Patient Profile Vitals Plot
tm_a_geeteal Module: Generalized Estimating Equations (GEE) analysis
tm_a_mmrmteal Module: Mixed Model Repeated Measurements (MMRM)...
tm_g_barchart_simpleteal Module: Simple Bar Chart and Table of Counts per...
tm_g_citeal Module: Confidence Interval Plot
tm_g_forest_rspteal Module: Forest Response Plot
tm_g_forest_tteteal Module: Forest Survival Plot
tm_g_ippteal Module: Individual Patient Plots
tm_g_kmteal Module: Kaplan-Meier Plot
tm_g_lineplotteal Module: Line Plot
tm_g_pp_adverse_eventsteal Module: Patient Profile Adverse Events Table and Plot
tm_g_pp_patient_timelineteal Module: Patient Profile Timeline Plot
tm_g_pp_therapyteal Module: Patient Profile Therapy Table and Plot
tm_g_pp_vitalsteal Module: Patient Profile Vitals Plot
tm_t_abnormalityteal Module: Abnormality Summary Table
tm_t_abnormality_by_worst_gradeteal Module: Laboratory test results with highest grade...
tm_t_ancovateal Module: ANCOVA Summary
tm_t_binary_outcometeal Module: Binary Outcome Table
tm_t_coxregteal Module: Cox Regression Model
tm_t_eventsteal Module: Events by Term
tm_t_events_by_gradeteal Module: Events by Grade
tm_t_events_patyearteal Module: Event Rates Adjusted for Patient-Years
tm_t_events_summaryteal Module: Adverse Events Summary
tm_t_exposureteal Module: Exposure Table for Risk management plan
tm_t_logisticteal Module: Logistic Regression
tm_t_mult_eventsteal Module: Multiple Events by Term
tm_t_pp_basic_infoteal Module: Patient Profile Basic Info
tm_t_pp_laboratoryteal Module: Patient Profile Laboratory Table
tm_t_pp_medical_historyteal Module: Patient Profile Medical History
tm_t_pp_prior_medicationteal Module: Patient Profile Prior Medication
tm_t_shift_by_armteal Module: Shift by Arm
tm_t_shift_by_arm_by_worstteal Module: Shift by Arm by Worst Analysis Indicator Level
tm_t_shift_by_gradeteal Module: Grade Summary Table
tm_t_smqteal Module: Adverse Events Table by Standardized MedDRA...
tm_t_summaryteal Module: Summary of Variables
tm_t_summary_byteal Module: Summarize Variables by Row Groups
tm_t_tteteal Module: Time-To-Event Table
validate_armCheck if vector is valid as to be used as a treatment arm...
validate_standard_inputsValidate standard input values for a teal module
teal.modules.clinical documentation built on April 4, 2025, 12:35 a.m.