Man pages for teal.modules.clinical
'teal' Modules for Standard Clinical Outputs
| add_expr | Expression List |
| arm_ref_comp_observer | Observer for Treatment reference variable |
| as_num | Parse text input to numeric vector |
| bracket_expr | Expressions in Brackets |
| call_concatenate | Concatenate expressions via a binary operator |
| check_arm_ref_comp | Check if the Treatment variable is reference or compare |
| clean_description | Clean up categorical variable description |
| color_lab_values | Mapping function for Laboratory Table |
| column_annotation_label | Get full label, useful for annotating plots |
| control_tte | Control Function for Time-To-Event teal Module |
| cs_to_des_filter | Convert choices_selected to data_extract_spec with only... |
| cs_to_des_select | Convert choices_selected to data_extract_spec with only... |
| cs_to_filter_spec | Convert choices_selected to filter_spec |
| cs_to_select_spec | Convert choices_selected to select_spec |
| default_total_label | Default string for total column label |
| ex_data | Simulated 'CDISC' Data for Examples |
| extract_input | Extracts html id for 'data_extract_ui' |
| facet_grid_formula | Facetting formula 'x_facet ~ y_facet' |
| get_g_forest_obj_var_name | Utility function for extracting 'paramcd' for forest plots |
| get_paramcd_label | Extract the associated parameter value for 'paramcd' |
| get_var_labels | Get variable labels |
| h_concat_expr | Expression Deparsing |
| is.cs_or_des | Whether object is of class... |
| make_barchart_simple_call | 'ggplot2' call to generate simple bar chart |
| module_arguments | Standard Module Arguments |
| pipe_expr | Expressions as a Pipeline |
| prepare_arm | Expression: Arm Preparation |
| prepare_arm_levels | Expression: Prepare Arm Levels |
| select_decorators | Subset decorators based on the scope |
| split_choices | Split 'choices_selected' objects with interactions into their... |
| split_col_expr | Split-Column Expression |
| split_interactions | Split interaction terms into their component variables |
| srv_decorate_teal_data | Wrappers around 'srv_transform_teal_data' that allows to... |
| substitute_names | Substitute Names in a Quoted Expression |
| substitute_q | Substitute in Quoted Expressions |
| teal.modules.clinical-package | 'teal' Modules for Standard Clinical Outputs |
| template_abnormality | Template: Abnormality Summary Table |
| template_abnormality_by_worst_grade | Template: Laboratory test results with highest grade... |
| template_adverse_events | Template: Patient Profile Adverse Events Table and Plot |
| template_a_gee | Template for Generalized Estimating Equations (GEE) analysis... |
| template_ancova | Template: ANCOVA Summary |
| template_arguments | Standard Template Arguments |
| template_basic_info | Template: Patient Profile Basic Info |
| template_binary_outcome | Template: Binary Outcome |
| template_coxreg_m | Template: Multi-Variable Cox Regression |
| template_coxreg_u | Template: Univariable Cox Regression |
| template_events | Template: Events by Term |
| template_events_by_grade | Template: Events by Grade |
| template_events_col_by_grade | Template: Adverse Events Grouped by Grade with Threshold |
| template_events_patyear | Template: Event Rates Adjusted for Patient-Years |
| template_events_summary | Template: Adverse Events Summary |
| template_exposure | Template: Exposure Table for Risk management plan |
| template_fit_mmrm | Template: Mixed Model Repeated Measurements (MMRM) Analysis |
| template_forest_rsp | Template: Response Forest Plot |
| template_forest_tte | Template: Survival Forest Plot |
| template_g_ci | Template: Confidence Interval Plot |
| template_g_ipp | Template: Individual Patient Plots |
| template_g_km | Template: Kaplan-Meier Plot |
| template_g_lineplot | Template: Line Plot |
| template_laboratory | Template: Patient Profile Laboratory Table |
| template_logistic | Template: Logistic Regression |
| template_medical_history | Template: Patient Profile Medical History |
| template_mult_events | Template: Multiple Events by Term |
| template_patient_timeline | Template: Patient Profile Timeline Plot |
| template_prior_medication | Template: Patient Profile Prior Medication |
| template_shift_by_arm | Template: Shift by Arm |
| template_shift_by_arm_by_worst | Template: Shift by Arm by Worst Analysis Indicator Level |
| template_shift_by_grade | Template: Grade Summary Table |
| template_smq | Template: Adverse Events Table by Standardized MedDRA Query |
| template_summary | Template: Summary of Variables |
| template_summary_by | Template: Summarize Variables by Row Groups Module |
| template_therapy | Template: Patient Profile Therapy Table and Plot |
| template_tte | Template: Time-To-Event |
| template_vitals | Template: Patient Profile Vitals Plot |
| tm_a_gee | teal Module: Generalized Estimating Equations (GEE) analysis |
| tm_a_mmrm | teal Module: Mixed Model Repeated Measurements (MMRM)... |
| tm_g_barchart_simple | teal Module: Simple Bar Chart and Table of Counts per... |
| tm_g_ci | teal Module: Confidence Interval Plot |
| tm_g_forest_rsp | teal Module: Forest Response Plot |
| tm_g_forest_tte | teal Module: Forest Survival Plot |
| tm_g_ipp | teal Module: Individual Patient Plots |
| tm_g_km | teal Module: Kaplan-Meier Plot |
| tm_g_lineplot | teal Module: Line Plot |
| tm_g_pp_adverse_events | teal Module: Patient Profile Adverse Events Table and Plot |
| tm_g_pp_patient_timeline | teal Module: Patient Profile Timeline Plot |
| tm_g_pp_therapy | teal Module: Patient Profile Therapy Table and Plot |
| tm_g_pp_vitals | teal Module: Patient Profile Vitals Plot |
| tm_t_abnormality | teal Module: Abnormality Summary Table |
| tm_t_abnormality_by_worst_grade | teal Module: Laboratory test results with highest grade... |
| tm_t_ancova | teal Module: ANCOVA Summary |
| tm_t_binary_outcome | teal Module: Binary Outcome Table |
| tm_t_coxreg | teal Module: Cox Regression Model |
| tm_t_events | teal Module: Events by Term |
| tm_t_events_by_grade | teal Module: Events by Grade |
| tm_t_events_patyear | teal Module: Event Rates Adjusted for Patient-Years |
| tm_t_events_summary | teal Module: Adverse Events Summary |
| tm_t_exposure | teal Module: Exposure Table for Risk management plan |
| tm_t_glm_counts | Teal Module: Regression Counts Summary |
| tm_t_logistic | teal Module: Logistic Regression |
| tm_t_mult_events | teal Module: Multiple Events by Term |
| tm_t_pp_basic_info | teal Module: Patient Profile Basic Info |
| tm_t_pp_laboratory | teal Module: Patient Profile Laboratory Table |
| tm_t_pp_medical_history | teal Module: Patient Profile Medical History |
| tm_t_pp_prior_medication | teal Module: Patient Profile Prior Medication |
| tm_t_shift_by_arm | teal Module: Shift by Arm |
| tm_t_shift_by_arm_by_worst | teal Module: Shift by Arm by Worst Analysis Indicator Level |
| tm_t_shift_by_grade | teal Module: Grade Summary Table |
| tm_t_smq | teal Module: Adverse Events Table by Standardized MedDRA... |
| tm_t_summary | teal Module: Summary of Variables |
| tm_t_summary_by | teal Module: Summarize Variables by Row Groups |
| tm_t_tte | teal Module: Time-To-Event Table |
| validate_arm | Check if vector is valid as to be used as a treatment arm... |
| validate_standard_inputs | Validate standard input values for a teal module |
