activations | Activations of (s)tICA |
bdiag_m | Block diagonal matrix |
center_Bcols_Param | center_Bcols |
check_req_ifti_pkg | Check required packages for the data format |
compute_mu_s | Compute posterior mean and precision of s |
compute_R_inv | Compute SPDE and prior precision matrices for S |
detrend_DCT_Param | detrend_DCT |
dual_reg | Dual Regression |
dual_reg2 | Dual Regression wrapper |
EM_FCtemplateICA | EM Algorithm for FC Template ICA Model |
EM_templateICA | EM Algorithms for Template ICA Models |
estimate_nu_matrix | Estimate IW dof parameter nu based on method of moments |
estimate_template | Estimate template |
estimate_template_FC | Estimate FC template |
estimate_template_from_DR | Estimate template from DR |
estimate_template_from_DR_two | Estimate template from DR estimates (when there are two... |
export_template | Export template |
get_FORMAT | Get FORMAT from format |
Gibbs_AS_posteriorCPP | Use a Gibbs sampler for the A and S variables (E-step of the... |
groupICA.cifti | Perform group ICA based on CIFTI data |
INLA_check | Check for INLA |
IW_var | Compute theoretical Inverse-Wishart variance of covariance... |
LL2_kappa | Compute part of appa log-likelihood |
LL_SQUAREM | Log-likelihood SQUAREM |
loglik_kappa_est | Kappa log-likelihood |
make_mask | Create a mask based on vertices that are invalid |
make_mesh | Make INLA mesh from '"surf"' object |
make_mesh_2D | Make 2D INLA mesh |
make_Pmat | Make permutation matrix |
normA_Param | normA |
norm_BOLD | Normalize BOLD data |
PCA | PCA |
plot.template.cifti | Plot template |
plot.template.gifti | Plot template |
plot.template.matrix | Plot template |
plot.template.nifti | Plot template |
plot.tICA_act.cifti | Plot activations |
plot.tICA.cifti | Plot template |
plot.tICA.matrix | Plot template |
plot.tICA.nifti | Plot template |
Q2_max_check | Check 'Q2_max' |
removebs_template | Remove brain structure from CIFTI template |
resample_template | Resample CIFTI template |
rm_nuisIC | Remove nuisance ICs from data |
scale_Param | scale |
struct_template | Apply data structure to templates |
summary.template.cifti | Summarize a '"template.cifti"' object |
summary.template.gifti | Summarize a '"template.gifti"' object |
summary.template.matrix | Summarize a '"template.matrix"' object |
summary.template.nifti | Summarize a '"template.nifti"' object |
summary.tICA_act.cifti | Summarize a '"tICA_act.cifti"' object |
summary.tICA_act.matrix | Summarize a '"tICA_act.matrix"' object |
summary.tICA.cifti | Summarize a '"tICA.cifti"' object |
summary.tICA.matrix | Summarize a '"tICA.matrix"' object |
summary.tICA.nifti | Summarize a '"tICA.nifti"' object |
templateICA | Template ICA |
UpdateTheta_FCtemplateICA | Update FC Template ICA parameters (tau_sq, alpha, G) |
UpdateTheta_FCtemplateICAcpp | Update parameters (M-step of the EM) |
UpdateThetaSQUAREM_templateICA | Update theta SQUAREM |
UpdateTheta_templateICA | Parameter Estimates in EM Algorithm for Template ICA Model |
var_sq_err | Compute the error between empirical and theoretical variance... |
varTol_Param | varTol |
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