Man pages for templateICAr
Estimate Brain Networks and Connectivity with ICA and Empirical Priors
| activations | Activations of (s)tICA |
| bdiag_m | Block diagonal matrix |
| center_Bcols_Param | center_Bcols |
| check_req_ifti_pkg | Check required packages for the data format |
| compute_mu_s | Compute posterior mean and precision of s |
| compute_R_inv | Compute SPDE and prior precision matrices for S |
| detrend_DCT_Param | detrend_DCT |
| dual_reg | Dual Regression |
| dual_reg2 | Dual Regression wrapper |
| EM_FCtemplateICA | EM Algorithm for FC Template ICA Model |
| EM_templateICA | EM Algorithms for Template ICA Models |
| estimate_nu_matrix | Estimate IW dof parameter nu based on method of moments |
| estimate_template | Estimate template |
| estimate_template_FC | Estimate FC template |
| estimate_template_from_DR | Estimate template from DR |
| estimate_template_from_DR_two | Estimate template from DR estimates (when there are two... |
| export_template | Export template |
| get_FORMAT | Get FORMAT from format |
| Gibbs_AS_posteriorCPP | Use a Gibbs sampler for the A and S variables (E-step of the... |
| groupICA.cifti | Perform group ICA based on CIFTI data |
| INLA_check | Check for INLA |
| IW_var | Compute theoretical Inverse-Wishart variance of covariance... |
| LL2_kappa | Compute part of appa log-likelihood |
| LL_SQUAREM | Log-likelihood SQUAREM |
| loglik_kappa_est | Kappa log-likelihood |
| make_mask | Create a mask based on vertices that are invalid |
| make_mesh | Make INLA mesh from '"surf"' object |
| make_mesh_2D | Make 2D INLA mesh |
| make_Pmat | Make permutation matrix |
| normA_Param | normA |
| norm_BOLD | Normalize BOLD data |
| PCA | PCA |
| plot.template.cifti | Plot template |
| plot.template.gifti | Plot template |
| plot.template.matrix | Plot template |
| plot.template.nifti | Plot template |
| plot.tICA_act.cifti | Plot activations |
| plot.tICA.cifti | Plot template |
| plot.tICA.matrix | Plot template |
| plot.tICA.nifti | Plot template |
| Q2_max_check | Check 'Q2_max' |
| removebs_template | Remove brain structure from CIFTI template |
| resample_template | Resample CIFTI template |
| rm_nuisIC | Remove nuisance ICs from data |
| scale_Param | scale |
| struct_template | Apply data structure to templates |
| summary.template.cifti | Summarize a '"template.cifti"' object |
| summary.template.gifti | Summarize a '"template.gifti"' object |
| summary.template.matrix | Summarize a '"template.matrix"' object |
| summary.template.nifti | Summarize a '"template.nifti"' object |
| summary.tICA_act.cifti | Summarize a '"tICA_act.cifti"' object |
| summary.tICA_act.matrix | Summarize a '"tICA_act.matrix"' object |
| summary.tICA.cifti | Summarize a '"tICA.cifti"' object |
| summary.tICA.matrix | Summarize a '"tICA.matrix"' object |
| summary.tICA.nifti | Summarize a '"tICA.nifti"' object |
| templateICA | Template ICA |
| UpdateTheta_FCtemplateICA | Update FC Template ICA parameters (tau_sq, alpha, G) |
| UpdateTheta_FCtemplateICAcpp | Update parameters (M-step of the EM) |
| UpdateThetaSQUAREM_templateICA | Update theta SQUAREM |
| UpdateTheta_templateICA | Parameter Estimates in EM Algorithm for Template ICA Model |
| var_sq_err | Compute the error between empirical and theoretical variance... |
| varTol_Param | varTol |
