plot.template.nifti: Plot template

In templateICAr: Estimate Brain Networks and Connectivity with ICA and Empirical Priors

Plot template

Description

Based on oro.nifti::image.

Usage

## S3 method for class 'template.nifti'
plot(
  x,
  stat = c("mean", "sd", "var"),
  plane = c("axial", "sagittal", "coronal"),
  n_slices = 9,
  slices = NULL,
  var_method = c("non-negative", "unbiased"),
  ...
)

Arguments

x	The template from estimate_template.nifti
stat	"mean" (default), "sd", or "var". ("sd" will show the square root of the variance template.)
plane, n_slices, slices	Anatomical plane and which slice indices to show. Default: 9 axial slices.
var_method	"non-negative" (default) or "unbiased"
...	Additional arguments to oro.nifti::image

Details

Consider using struct_template to obtain the 3D volumes to plot with a different viewer function (e.g. from oro.nifti) if desired.

Value

The plot

templateICAr documentation built on April 3, 2025, 7:41 p.m.