Man pages for threeBrain
Your Advanced 3D Brain Visualization
| AbstractGeom | R6 Class - Abstract Class of Geometries |
| BlankGeom | A geometry that renders nothing |
| brain_proxy | Shiny Proxy for Viewer |
| brain_setup | Setup Package, Install Environment |
| calculate_rotation | Calculate rotation matrix from non-zero vectors |
| check_freesurfer_path | Function to check whether 'FreeSurfer' folder has everything... |
| conform_volume | Conform imaging data in "FreeSurfer" way |
| create_group | Create a geometry group containing multiple geometries |
| cross_prod | Calculate cross-product of two vectors in '3D' |
| DataCubeGeom | R6 Class - Generate Data Cube Geometry |
| DataCubeGeom2 | R6 Class - Generate Data Cube Geometry via 3D Volume Texture |
| default_template_directory | Default Directory to Store Template Brain |
| FreeGeom | R6 Class - Generate Geometry from Vertices and Face Indices |
| freesurfer_brain | Read 'FreeSurfer' surface and volume files |
| freesurfer_lut | Query the 'FreeSurfer' labels |
| generate_smooth_envelope | Generate smooth envelope around surface |
| generate_subcortical_surface | Approximate 'sub-cortical' surfaces from 'parcellation' |
| geom_freemesh | Creates any mesh geometry given vertices and face indices |
| GeomGroup | R6 Class - Generate Group of Geometries |
| geom_sphere | Create sphere geometry |
| get_digest_header | Function to read digest header |
| get_ijk2ras | Get 'voxel' to world matrix |
| import_from_freesurfer | Import from 'FreeSurfer' and create 'JSON' cache for 3D... |
| import-fs-suma | Import 'FreeSurfer' or 'SUMA' files into the viewer structure |
| LineSegmentsGeom | R6 Class - Generate Line Segments |
| list_electrode_prototypes | List or load all electrode prototypes |
| localization_module | Launch a 'shiny' application to localize electrodes |
| merge_brain | Create Multi-subject Template |
| new_electrode_prototype | Create or load new electrode prototype from existing... |
| plot_slices | Plot slices of volume |
| read_fs_asc | Read 'FreeSurfer' ascii file |
| read_fs_labels | Read FreeSurfer Annotations |
| read_fs_m3z | Read 'FreeSurfer' m3z file |
| read_fs_mgh_mgz | Read 'FreeSurfer' 'mgz/mgh' file |
| read_gii2 | Function to load surface data from 'Gifti' files |
| read_mgz | Function to load 'FreeSurfer' 'mgz/mgh' file |
| read_volume | Read volume file in "MGH" or "Nifti" formats |
| reexports | Objects exported from other packages |
| renderBrain | Shiny Renderer for threeBrain Widgets |
| reorient_volume | Function to reshape data to 'RAS' order |
| save_brain | Save threeBrain widgets to local file system |
| seeg_prototype | Create "sEEG" shaft geometry prototype |
| SphereGeom | R6 Class - Generate Sphere Geometry |
| SpriteGeom | R6 Class - Generate Sphere Geometry |
| template_subject | Download and Manage Template Subjects |
| threeBrain | Create a brain object |
| threejs_brain | Create a Threejs Brain and View it in Browsers |
| threejsBrainOutput | Shiny Output for threeBrain Widgets |
| TubeGeom | R6 Class - Generate Tube Geometry |
| video_content | Add video content to the viewer |
| volume_to_surf | Generate surface file from "nii" or "mgz" volume files |
| voxel_colormap | Color maps for volume or surface data |
| voxel_cube | Generate volume data from 'MNI' coordinates |
