import-fs-suma: Import 'FreeSurfer' or 'SUMA' files into the viewer structure

In threeBrain: Your Advanced 3D Brain Visualization

Import 'FreeSurfer' or 'SUMA' files into the viewer structure

Description

Import 'T1-MRI', surface files, curvature/'sulcus', atlas, and 'Talairach' transform matrix into 'json' format. These functions are not intended to be called directly, use import_from_freesurfer instead.

Usage

import_fs(
  subject_name,
  fs_path,
  quiet = FALSE,
  dtype = c("T1", "surface", "curv", "atlas_volume", "atlas_surface", "xform"),
  sub_type = NULL,
  hemisphere = c("l", "r"),
  ...
)

import_suma(
  subject_name,
  fs_path,
  quiet = FALSE,
  dtype = c("T1", "surface", "curv", "atlas_volume", "atlas_surface", "xform"),
  sub_type = NULL,
  hemisphere = c("l", "r"),
  ...
)

Arguments

subject_name	character, subject code
fs_path	path to 'FreeSurfer' folder
quiet, ...	passed from or to other methods.
dtype	data type to import, choices are 'T1', 'surface', 'curv', 'atlas_volume', 'atlas_surface', 'xform'
sub_type	detailed files to import. 'atlas_surface' is not supported for now
hemisphere	which hemisphere to import, ignored when dtype is in 'T1', 'atlas_volume', 'atlas_surface', 'xform'.

Value

logical, TRUE if the file is or has been cached, or FALSE if the file is missing.

threeBrain documentation built on April 4, 2025, 1:36 a.m.