template_subject | R Documentation |
Download and Manage Template Subjects
download_template_subject(
subject_code = "N27",
url,
template_dir = default_template_directory()
)
download_N27(make_default = FALSE, ...)
set_default_template(
subject_code,
view = TRUE,
template_dir = default_template_directory()
)
threebrain_finalize_installation(
upgrade = c("ask", "always", "never", "data-only", "config-only"),
async = TRUE
)
available_templates()
subject_code |
character with only letters and numbers (Important); default is 'N27' |
url |
zip file address; must be specified if |
template_dir |
parent directory where subject's 'FreeSurfer' folder should be stored |
make_default |
logical, whether to make 'N27' default subject |
... |
more to pass to |
view |
whether to view the subject |
upgrade |
whether to check and download 'N27' brain interactively. Choices are 'ask', 'always', and 'never' |
async |
whether to run the job in parallel to others; default is true |
To view electrodes implanted in multiple subjects, it's highly
recommended to view them in a template space The detail mapping method
is discussed in function freesurfer_brain
.
To map to a template space, one idea is to find someone whose brain is
normal. In our case, the choice is subject 'N27', also known as 'Colin 27'.
function download_N27
provides a simple and easy way to download a
partial version from the Internet.
If you have any other ideas about template brain, you can use function
set_default_template(subject_code, template_dir)
to redirect to
your choice. If your template brain is a 'Zip' file on the Internet, we
provide function download_template_subject
to automatically install it.
Zhengjia Wang
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