Files in tidyMicro

A Pipeline for Microbiome Analysis and Visualization

README.md R/Williamson_funs.R R/rocky_mtn_helper.R R/Data_MRSA_Clin.R R/Data_MRSA_Gen.R R/Data_BPD_Class.R R/micro_alpha_reg.R R/alpha_div.R R/bb_bars_helper.R R/ra_bars.R R/cor_heatmap.R R/bb_mods_helper.R R/utils-pipe.R R/Data_BPD_Family.R R/micro_forest.R R/three_mode_pca.R R/beta_heatmap.R R/Data_BPD_Order.R R/bb_mods.R R/alpha_div_helper.R R/micro_rocky_mtn.R R/beta_divs.R R/nb_bars.R R/nb_bars_helper.R R/micro_PERMANOVA_helper.R R/tidy_micro.R R/micro_otu.R R/bb_agg_bar.R R/micro_pca_helper.R R/cor_rocky_mtn.R R/micro_pca.R R/box_plot.R R/pca_3d.R R/taxa_summary.R R/tidy_micro_helper.R R/pca_helper.R R/filter_funs.R R/micro_heatmap.R R/micro_PERMANOVA.R R/micro_chisq.R R/Data_BPD_Phylum.R R/nb_mods_helper.R R/utils-tidy-eval.R R/bb_bars.R R/micro_rank_sum.R R/filter_funs_helper.R R/nb_mods.R R/Data_BPD_Clin.R inst/doc/tidy_micro_vignette.R inst/doc/tidy_micro_vignette.Rmd tests/testthat.R tests/testthat/test_micro_heatmap.R tests/testthat/test_chisq_rank_sum.R tests/testthat/test_bb_bars.R tests/testthat/test_tidyMicro.R tests/testthat/test_otu_filters.R tests/testthat/test_cor_rocky_mtn.R tests/testthat/test_cor_heatmap.R tests/testthat/test_beta_heatmap.R tests/testthat/test_pca_3d.R tests/testthat/test_micro_rocky_mtn.R tests/testthat/test_nb_bars.R tests/testthat/test_micro_forest.R tests/testthat/test_alpha_div.R tests/testthat/test_micro_pca.R tests/testthat/test_ra_bars.R vignettes/tidy_micro_vignette.Rmd man/bpd_cla.Rd man/taxa_boxplot.Rd man/micro_rocky_mtn.Rd man/tidyeval.Rd man/micro_PERMANOVA.Rd man/bpd_phy.Rd man/micro_otu.Rd man/bpd_fam.Rd man/beta_div.Rd man/bb_mods.Rd man/beta_heatmap.Rd man/nb_bars.Rd man/three_mode.Rd man/cor_heatmap.Rd man/micro_alpha_reg.Rd man/mrsa_clin.Rd man/taxa_summary.Rd man/pca_3d.Rd man/mrsa_gen.Rd man/bpd_clin.Rd man/pipe.Rd man/bb_bars.Rd man/micro_chisq.Rd man/alpha_div.Rd man/micro_forest.Rd man/ra_bars.Rd man/micro_pca.Rd man/micro_heatmap.Rd man/otu_filter.Rd man/micro_rank_sum.Rd man/cor_rocky_mtn.Rd man/bpd_ord.Rd man/tidy_micro.Rd man/nb_mods.Rd