if (requireNamespace("MASS", quietly = TRUE)) { library(tidypredict) library(dplyr) eval_code <- TRUE } else { eval_code <- FALSE } knitr::opts_chunk$set( collapse = TRUE, comment = "#>", eval = eval_code )
| Function |Works|
|---------------------------------------------------------------|-----|
|tidypredict_fit(), tidypredict_sql(), parse_model() | ✔ |
|tidypredict_to_column() | ✗ |
|tidypredict_test() | ✗ |
|tidypredict_interval(), tidypredict_sql_interval() | ✗ |
|parsnip | ✔ |
MASS::qda() fits quadratic discriminant analysis models. Unlike MASS::lda(),
each class gets its own covariance estimate, so the class scores are quadratic
rather than linear in the predictors: one intercept, one coefficient per
predictor, and one coefficient per pair of predictors. The posterior
probabilities are the softmax of those class scores.
Because these models predict one probability per outcome class,
tidypredict_fit() returns a named list of expressions, one for each class,
rather than a single expression. Since the output is a list,
tidypredict_to_column() and tidypredict_test() are not supported.
tidypredict_ functionsNote that MASS is used with :: below rather than attached, because attaching
it would mask dplyr::select().
model <- MASS::qda(Species ~ ., data = iris)
Create the R formulas, one per class
r
fit <- tidypredict_fit(model)
names(fit)
fit[["setosa"]]
Add the predictions to the original table ```r library(dplyr)
iris %>% mutate(!!!tidypredict_fit(model)) %>% glimpse() ```
predict() results
r
probs <- sapply(fit, \(f) rlang::eval_tidy(f, iris))
all.equal(unname(probs), unname(predict(model, iris)$posterior))parsnip fitted models are also supported by tidypredict:
library(parsnip) library(discrim) p_model <- discrim_quad() %>% set_engine("MASS") %>% fit(Species ~ ., data = iris)
tidypredict_fit(p_model)[["virginica"]]
Here is an example of the model spec:
pm <- parse_model(model) str(pm, 2)
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