API for tidytree
A Tidy Tool for Phylogenetic Tree Data Manipulation
| Global functions | |
|---|---|
| %<>% | Man page |
| %>% | Man page |
| .MRCA.tbl_tree_internal | Source code |
| .data | Man page |
| .extract_annotda.treedata | Source code |
| .groupOTU.tbl_tree_item | Source code |
| .internal.assign.lab.abort | Source code |
| .internal.child | Source code |
| .internal.keep.tip | Source code |
| .internal_add_isTip | Source code |
| .internal_nest | Source code |
| .isTip.tbl_tree | Source code |
| .offspring.tbl_tree_item | Source code |
| .onAttach | Source code |
| .update.phylo.rename | Source code |
| .update.td.join | Source code |
| .update.td.rename | Source code |
| .update.treedata | Source code |
| MRCA | Man page Source code |
| MRCA.phylo | Source code |
| MRCA.tbl_tree | Source code |
| MRCA.treedata | Source code |
| Nnode | Man page |
| Nnode.tbl_tree | Source code |
| Nnode.treedata | Man page Source code |
| Ntip | Man page |
| Ntip.tbl_tree | Source code |
| Ntip.treedata | Source code |
| `[.treedata` | Source code |
| `[[.treedata` | Source code |
| `node.label<-.phylo` | Source code |
| `node.label<-.tbl_tree` | Source code |
| `node.label<-.treedata` | Source code |
| `node.label<-` | Source code |
| `tip.label<-.phylo` | Source code |
| `tip.label<-.tbl_tree` | Source code |
| `tip.label<-.treedata` | Source code |
| `tip.label<-` | Source code |
| add_class | Source code |
| ancestor | Man page Source code |
| ancestor.phylo | Source code |
| ancestor.tbl_tree | Man page Source code |
| ancestor.treedata | Source code |
| arrange | Man page |
| as.phylo | Man page |
| as.phylo.tbl_tree | Source code |
| as.phylo.treedata | Source code |
| as.treedata | Man page Source code |
| as.treedata.tbl_tree | Man page Source code |
| as.ultrametric | Man page Source code |
| as.ultrametric.phylo | Source code |
| as.ultrametric.tbl_tree | Source code |
| as.ultrametric.treedata | Source code |
| as_tibble | Man page |
| as_tibble.phylo | Source code |
| as_tibble.treedata | Source code |
| build_new_labels | Source code |
| build_new_tree | Source code |
| check.lab | Source code |
| check_names_from_phylo | Source code |
| child | Man page Source code |
| child.phylo | Source code |
| child.tbl_tree | Man page Source code |
| child.treedata | Source code |
| drop.tip | Man page |
| drop.tip,phylo | Man page |
| drop.tip,phylo-method | Man page |
| drop.tip,treedata | Man page |
| drop.tip,treedata-method | Man page |
| drop.tip.treedata | Source code |
| drop_class | Source code |
| fields_wrap | Source code |
| filename | Source code |
| filter | Man page |
| filter.ggtree | Source code |
| filter.tbl_tree | Source code |
| filter.treedata | Source code |
| full_join | Man page |
| full_join.phylo | Source code |
| full_join.treedata | Source code |
| get.data | Man page |
| get.data,treedata-method | Man page |
| get.fields | Man page |
| get.fields,treedata | Man page |
| get.fields,treedata-method | Man page |
| get.fields.data | Source code |
| get.fields.extraInfo | Source code |
| get.fields.treedata | Source code |
| get.treetext | Man page |
| get.treetext,treedata-method | Man page |
| getNodeNum | Man page Source code |
| get_tree_data | Man page Source code |
| gfocus | Source code |
| groupClade | Man page Source code |
| groupClade.phylo | Source code |
| groupClade.tbl_tree | Source code |
| groupClade.treedata | Source code |
| groupOTU | Man page Source code |
| groupOTU.phylo | Source code |
| groupOTU.tbl_tree | Source code |
| groupOTU.treedata | Source code |
| has_fields | Source code |
| inner_join.phylo | Source code |
| inner_join.treedata | Source code |
| is.rooted | Man page |
| is.rooted.treedata | Source code |
| isTip | Man page Source code |
| isTip.phylo | Man page Source code |
| isTip.tbl_tree | Man page Source code |
| isTip.treedata | Man page |
| is_numeric | Source code |
| itself | Source code |
| keep.tip | Man page |
| keep.tip,phylo-method | Man page |
| keep.tip,treedata-method | Man page |
| left_join | Man page |
| left_join.phylo | Source code |
| left_join.tbl_tree | Source code |
| left_join.treedata | Source code |
| merge.tbl_tree | Source code |
| mutate | Man page |
| mutate.tbl_tree | Source code |
| mutate.treedata | Source code |
| node.label | Man page Source code |
| node.label.phylo | Source code |
| node.label.tbl_tree | Source code |
| node.label.treedata | Source code |
| node.label<- | Man page |
| node.label<-.phylo | Man page |
| node.label<-.tbl_tree | Man page |
| node.label<-.treedata | Man page |
| nodeIds | Source code |
| nodeid | Man page Source code |
| nodeid.phylo | Source code |
| nodeid.tbl_tree | Source code |
| nodeid.treedata | Source code |
| nodelab | Man page Source code |
| nodelab.phylo | Source code |
| nodelab.tbl_tree | Source code |
| nodelab.treedata | Source code |
| offspring | Man page Source code |
| offspring.phylo | Source code |
| offspring.tbl_tree | Man page Source code |
| offspring.treedata | Source code |
| old_new_node_mapping | Source code |
| parent | Man page Source code |
| parent.phylo | Source code |
| parent.tbl_tree | Man page Source code |
| parent.treedata | Source code |
| print.tbl_tree | Source code |
| print.treedata | Source code |
| print1.treedata | Source code |
| print2.treedata | Source code |
| print_fields | Source code |
| pull | Man page |
| pull.treedata | Source code |
| random_ref | Source code |
| read.tree | Man page |
| reexports | Man page |
| rename | Man page |
| rename.tbl_tree | Source code |
| rename.treedata | Source code |
| root | Man page |
| root.treedata | Man page Source code |
| rootnode | Man page Source code |
| rootnode.phylo | Source code |
| rootnode.tbl_tree | Source code |
| rtree | Man page |
| select | Man page |
| select.ggtree | Source code |
| select.tbl_tree | Source code |
| select.treedata | Source code |
| show | Man page |
| show,treedata-method | Man page |
| sibling | Man page Source code |
| sibling.phylo | Source code |
| sibling.tbl_tree | Source code |
| summarise | Man page |
| summarize | Man page |
| td-label-assign | Man page |
| tibble | Man page |
| tip.label | Man page Source code |
| tip.label.phylo | Source code |
| tip.label.tbl_tree | Source code |
| tip.label.treedata | Source code |
| tip.label<- | Man page |
| tip.label<-.phylo | Man page |
| tip.label<-.tbl_tree | Man page |
| tip.label<-.treedata | Man page |
| transmute | Man page |
| tree_subset | Man page Source code |
| tree_subset.phylo | Man page Source code |
| tree_subset.treedata | Man page Source code |
| tree_subset_internal | Source code |
| treedata | Man page Source code |
| treedata-class | Man page |
| unnest | Man page |
| unnest.treedata | Source code |
| valid.edge | Source code |
| valid.tbl_tree | Source code |
| valid.tbl_tree2 | Source code |
