SampleGenotype: Example genotype inferrence results
In tigger: Infers Novel Immunoglobulin Alleles from Sequencing Data
SampleGenotype R Documentation
Example genotype inferrence results
Description
A data.frame of genotype inference results from inferGenotype
after novel allele detection via findNovelAlleles.
Source data was a collection of V(D)J immunoglobulin sequences derived from a single
individual (PGP1), sequenced on the Roche 454 platform, and assigned by
IMGT/HighV-QUEST to IGHV1 family alleles.
Format
A data.frame where rows correspond to genes carried by an
individual and columns lists the alleles of those genes and their counts.
References
Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell
sequencing data reveals a high frequency of novel immunoglobulin V gene
segment alleles. PNAS. 112(8):E862-70.
See Also
See inferGenotype for detailed column descriptions.
tigger documentation built on Oct. 10, 2023, 5:08 p.m.
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| SampleGenotype | R Documentation |
Example genotype inferrence results
Description
A data.frame of genotype inference results from inferGenotype
after novel allele detection via findNovelAlleles.
Source data was a collection of V(D)J immunoglobulin sequences derived from a single
individual (PGP1), sequenced on the Roche 454 platform, and assigned by
IMGT/HighV-QUEST to IGHV1 family alleles.
Format
A data.frame where rows correspond to genes carried by an
individual and columns lists the alleles of those genes and their counts.
References
Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.
See Also
See inferGenotype for detailed column descriptions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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