cleanSeqs: Clean up nucleotide sequences
In tigger: Infers Novel Immunoglobulin Alleles from Sequencing Data
cleanSeqs R Documentation
Clean up nucleotide sequences
Description
cleanSeqs capitalizes nucleotides and replaces all characters
besides c("A", "C", "G", "T", "-", ".") with "N".
Usage
cleanSeqs(seqs)
Arguments
seqs
vector of nucleotide sequences.
Value
A modified vector of nucleotide sequences.
See Also
sortAlleles and updateAlleleNames can
help format a list of allele names.
Examples
# Clean messy nucleotide sequences
seqs <- c("AGAT.taa-GAG...ATA", "GATACAGTXXZZAGNNPPACA")
cleanSeqs(seqs)
tigger documentation built on Oct. 10, 2023, 5:08 p.m.
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| cleanSeqs | R Documentation |
Clean up nucleotide sequences
Description
cleanSeqs capitalizes nucleotides and replaces all characters
besides c("A", "C", "G", "T", "-", ".") with "N".
Usage
cleanSeqs(seqs)
Arguments
seqs |
vector of nucleotide sequences. |
Value
A modified vector of nucleotide sequences.
See Also
sortAlleles and updateAlleleNames can help format a list of allele names.
Examples
# Clean messy nucleotide sequences
seqs <- c("AGAT.taa-GAG...ATA", "GATACAGTXXZZAGNNPPACA")
cleanSeqs(seqs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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