searchSpace: Generate search space

In timma: Target Inhibition Interaction using Maximization and Minimization Averaging

Description

A function to generate the search space for sffs

Usage

searchSpace(drug_number, k_set, profile_data, y_actual)

Arguments

drug_number	an integer to specify the number of drugs
k_set	a vector to specify the selected target set
profile_data	drug-target interaction data
y_actual	the drug sensitivity data

Value

a list of the following components:

IM_d	search space of identical sets
IM_superset	search space of supersets
IM_subset	search space of subsets

Author(s)

Liye He [e-mail]

Examples

data(tyner_interaction_binary)
data(tyner_sensitivity)
num<-length(tyner_sensitivity[,1])
k_set<-rep(0, dim(tyner_interaction_binary)[2])
k_set[1]<-1
space<-searchSpace(num, k_set, tyner_interaction_binary, tyner_sensitivity[,1])

timma documentation built on May 2, 2019, 1:10 p.m.